## Last update: 2025-10-31
2025
Hoepfner, L.M., Nievergelt, A.P., Matrino, F., Scholz, M., Foster, H.E., Rodenfels, J., von Appen, A., Hippler, M., Pigino, G.
Unwrapping the Ciliary Coat: High-Resolution Structure and Function of the Ciliary Glycocalyx.
Advanced science (Weinheim, Baden-Wurttemberg, Germany), 12(16):e2413355 (2025)
Doi.org/10.1002/advs.202413355
Zhai, S., Pang, T., Peng, S., Zou, S., Deng, Z., Suzuki, N., Kang, Z., Andika, I.B., Sun, L.
A Viral RNA Silencing Suppressor Modulates Reactive Oxygen Species Levels to Induce the Autophagic Degradation of Dicer-Like and Argonaute-Like Proteins.
Advanced science (Weinheim, Baden-Wurttemberg, Germany), e06572 (2025)
Doi.org/10.1002/advs.202506572
Tazawa, M., Wayne, R., Katsuhara, M.
Analysis of the effect of permeant solutes on the hydraulic resistance of the plasma membrane in cells of Chara corallina.
Protoplasma, 262(2):385-395 (2025)
Doi.org/10.1007/s00709-024-02000-6
Oumaima, K., Hossain, M.S., Ye, W., Okuma, E., Issak, M., Islam, M.M., Uraji, M., Nakamura, Y., Mori, I.C., Munemasa, S., Murata, Y.
TGG1 and TGG2 mutations impair allyl isothiocyanate-mediated stomatal closure in Arabidopsis thaliana.
Protoplasma, 262(4):1023-1027 (2025)
Doi.org/10.1007/s00709-025-02039-z
Sahin, N., Watanabe, S., Tani, A.
Neptunitalea lumnitzerae sp. nov. isolated from the phyllosphere of the mangrove Lumnitzera racemosa Willd.
Antonie van Leeuwenhoek, 118(3):50 (2025)
Doi.org/10.1007/s10482-025-02062-3
Kishiro, K., Sahin, N., Saisho, D., Yamaji, N., Yamashita, J., Monden, Y., Nakagawa, T., Mochida, K., Tani, A.
Duganella hordei sp. nov., Duganella caerulea sp. nov., and Duganella rhizosphaerae sp. nov., isolated from barley rhizosphere.
Antonie van Leeuwenhoek, 118(10):146 (2025)
Doi.org/10.1007/s10482-025-02160-2
Hisano, H., Sakai, H., Hamaoka, M., Munemori, H., Abe, F., Meints, B., Sato, K., Hayes, P.M.
Rapid development of naked malting barley germplasm through targeted mutagenesis.
Molecular breeding : new strategies in plant improvement, 45(3):32 (2025)
Doi.org/10.1007/s11032-025-01553-5
Honda, S., Yokoyama, A., Suzuki, N.
RNA editing of genomic neighbors controls antiviral response in fungi.
Cell host & microbe, 33(4):545-559.e4 (2025)
Doi.org/10.1016/j.chom.2025.02.016
Takagi, H., Lee, N., Hempton, A.K., Purushwani, S., Notaguchi, M., Yamauchi, K., Shirai, K., Kawakatsu, Y., Uehara, S., Albers, W.G., Downing, B.L.R., Ito, S., Suzuki, T., Matsuura, T., Mori, I.C., Mitsuda, N., Kurihara, D., Matsushita, T., Song, Y.H., Sato, Y., Nomoto, M., Uchida, N., Tada, Y., Hanada, K., Cuperus, J.T., Queitsch, C., Imaizumi, T.
Florigen-producing cells express FPF1-LIKE PROTEIN 1 to accelerate flowering and stem growth in Arabidopsis.
Developmental cell, 60(13):1822-1837.e8 (2025)
Doi.org/10.1016/j.devcel.2025.02.003
Hu, J., Cameron, H., Rilling, J.I., Campos, M., Ruiz-Gil, T., Gonzalez, M.A., Gajardo, G., Vergara, K., Guzman, L., Espinoza-Gonzalez, O., Fuenzalida, G., Riquelme, C., Ueki, S., Nagai, S., Maruyama, F., Fujiyoshi, S., Yarimizu, K., Perera, I.U., Avila, A., Acuna, J.J., Zhang, Q., Jorquera, M.A.
Differentiation of microbial communities in coastal seawater before and during an Akashiwo sanguinea (Dinophyceae) bloom in the urban area of Antofagasta city (northern Chile).
Harmful algae, 142:102782 (2025)
Doi.org/10.1016/j.hal.2024.102782
Sugimoto, M., Maekawa, M., Mita, H., Yokobori, S.
Anthocyanin can improve the survival of rice seeds from solar light outside the international space station.
Life sciences in space research, 44:79-85 (2025)
Doi.org/10.1016/j.lssr.2024.10.010
Kou, Y., Kawano, Y.
The OsATG8-OsATG1-SPIN6 module: Linking nutrient sensing to OsRac1-mediated rice immunity via autophagy-independent mechanisms.
Molecular plant, 18(10):1623-1625 (2025)
Doi.org/10.1016/j.molp.2025.08.016
Ono, S., Tran, S.T.H., Saitoh, Y., Utsugi, S., Horie, T., Katsuhara, M.
The hidden cation-selective pore in ion-conducting aquaporin OsPIP2;4 from rice.
Plant physiology and biochemistry : PPB, 227:110168 (2025)
Doi.org/10.1016/j.plaphy.2025.110168
Liang, D., Yang, D., Li, T., Zhu, Z., Yan, B., He, Y., Li, X., Zhai, K., Liu, J., Kawano, Y., Deng, Y., Wu, X.N., Liu, J., He, Z.
A PRA-Rab trafficking machinery modulates NLR immune receptor plasma membrane microdomain anchoring and blast resistance in rice.
Science bulletin, 70(5):733-747 (2025)
Doi.org/10.1016/j.scib.2024.12.007
Williams, A.D., Leung, V.W., Tang, J.W., Hidekazu, N., Suzuki, N., Clarke, A.C., Pearce, D.A., Lam, T.T.
Ancient environmental microbiomes and the cryosphere.
Trends in microbiology, 33(2):233-249 (2025)
Doi.org/10.1016/j.tim.2024.09.010
Kondo, H., Fujita, M., Telengech, P., Maruyam, K., Hyodo, K., Tassi, A.D., Ochoa, R., Andika, I.B., Suzuki, N.
Evidence for the replication of a plant rhabdovirus in its arthropod mite vector.
Virus research, 351:199522 (2025)
Doi.org/10.1016/j.virusres.2024.199522
Rahimian, S., Ozawa, R., Uemura, T., Galis, I., Arimura, G.
Bush Basil Companion Plants Act as Plant Defense Potentiators for Cultivated Plants.
Journal of agricultural and food chemistry, 73(28):17542-17549 (2025)
Doi.org/10.1021/acs.jafc.5c05179
Tsukahara, S., Bousios, A., Perez-Roman, E., Yamaguchi, S., Leduque, B., Nakano, A., Naish, M., Osakabe, A., Toyoda, A., Ito, H., Edera, A., Tominaga, S., Juliarni, NA., Kato, K., Oda, S., Inagaki, S., Lorkovic, Z., Nagaki, K., Berger, F., Kawabe, A., Quadrana, L., Henderson, I., Kakutani, T.
Centrophilic retrotransposon integration via CENH3 chromatin in Arabidopsis.
Nature, 637(8046):744-748 (2025)
Doi.org/10.1038/s41586-024-08319-7
Guo, W., Schreiber, M., Marosi, V.B., Bagnaresi, P., Jorgensen, M.E., Braune, K.B., Chalmers, K., Chapman, B., Dang, V., Dockter, C., Fiebig, A., Fincher, G.B., Fricano, A., Fuller, J., Haaning, A., Haberer, G., Himmelbach, A., Jayakodi, M., Jia, Y., Kamal, N., Langridge, P., Li, C., Lu, Q., Lux, T., Mascher, M., Mayer, K.F.X., McCallum, N., Milne, L., Muehlbauer, G.J., Nielsen, M.T.S., Padmarasu, S., Pedas, P.R., Pillen, K., Pozniak, C., Rasmussen, M.W., Sato, K., Schmutzer, T., Scholz, U., Schuler, D., Simkova, H., Skadhauge, B., Stein, N., Thomsen, N.W., Voss, C., Wang, P., Wonneberger, R., Zhang, X., Zhang, G., Cattivelli, L., Spannagl, M., Bayer, M., Simpson, C., Zhang, R., Waugh, R.
A barley pan-transcriptome reveals layers of genotype-dependent transcriptional complexity.
Nature genetics, 57(2):441-450 (2025)
Doi.org/10.1038/s41588-024-02069-y
Kim, J., Sato, M., Kojima, M., Asrori, M.I., Uehara-Yamaguchi, Y., Takebayashi, Y., Do, T.N., Do, T.Y., Nguyen Thi, K.O., Sakakibara, H., Mochida, K., Ogita, S., Hirai, M.Y.
Multiomics-based assessment of the impact of airflow on diverse plant callus cultures.
Scientific data, 12(1):197 (2025)
Doi.org/10.1038/s41597-025-04518-7
Lubba, K.M., Yamamori, K., Kishima, Y.
Haplotype shifts in the lipid-related OsGELP gene family underpin rice adaptation to high latitudes.
Scientific reports, 15(1):32293 (2025)
Doi.org/10.1038/s41598-025-15488-6
Tran, S.T.H., Katsuhara, M., Mito, Y., Onishi, A., Higa, A., Ono, S., Paul, N.C., Horie, R., Harada, Y., Horie, T.
OsPIP2;4 aquaporin water channel primarily expressed in roots of rice mediates both water and nonselective Na(+) and K(+) conductance.
Scientific reports, 15(1):12857 (2025)
Doi.org/10.1038/s41598-025-96259-1
Nguyen Thao, T., Mitani-Ueno, N., Urano, R., Saitoh, Y., Wang, P., Yamaji, N., Shen, J., Shinoda, W., Ma, J.F., Suga, M.
Structural insights into a citrate transporter that mediates aluminum tolerance in barley.
Proceedings of the National Academy of Sciences of the United States of America, 122(32):e2501933122 (2025)
Doi.org/10.1073/pnas.2501933122
Nomura, T., Kim, J., Iwata, O., Yamada, K., Atsuji, K., Uehara-Yamaguchi, Y., Yoshida, T., Inoue, K., Takahagi, K., Sakurai, T., Shinozaki, K., Ito, T., Suzuki, K., Goda, K., Mochida, K.
Genetic dissection of nonconventional introns reveals codominant noncanonical splicing code in Euglena.
Proceedings of the National Academy of Sciences of the United States of America, 122(39):e2509937122 (2025)
Doi.org/10.1073/pnas.2509937122
Tanaka, T., Haraguchi, Y., Todoroki, T., Saisho, D., Abiko, T., Kai, H.
Reference-based chromosome-scale assembly of Japanese barley (Hordeum vulgare ssp. vulgare) cultivar Hayakiso 2.
DNA research : an international journal for rapid publication of reports on genes and genomes, 32(4):10.1093/dnares/dsaf016 (2025)
Doi.org/10.1093/dnares/dsaf016
Katayama, S., Shiraishi, K., Kaji, K., Kawabata, K., Tamura, N., Tani, A., Yurimoto, H., Sakai, Y.
Methanol chemoreceptor MtpA- and flagellin protein FliC-dependent methylotaxis contributes to the spatial colonization of PPFM in the phyllosphere.
ISME communications, 5(1):ycaf092 (2025)
Doi.org/10.1093/ismeco/ycaf092
Fukumoto, K., Hojo, Y., Nakatani, H., Wari, D., Shinya, T., Galis, I.
Flower jasmonates control fertility but are largely disconnected from defense metabolites in reproductive tissues of rice.
Journal of experimental botany, 76(10):2846-2863 (2025)
Doi.org/10.1093/jxb/eraf073
Fujii, T., Yamaji, N., Ma, J.F.
Dual roles of suberin deposition at endodermal Casparian strip in manganese uptake of rice.
Journal of experimental botany, eraf302 (2025)
Doi.org/10.1093/jxb/eraf302
Nakamura, K., Kikuchi, Y., Shiraga, M., Kotake, T., Hyodo, K., Taketa, S., Ikeda, Y.
SHORT AND CROOKED AWN, encoding the epigenetic regulator EMF1, promotes barley awn development.
Plant & cell physiology, 66(5):705-721 (2025)
Doi.org/10.1093/pcp/pcae150
Ooi, L., Matsuura, T., Mori, I.C.
Sulfur dioxide-induced guard cell death and stomatal closure are attenuated in nitrate/proton antiporter AtCLCa mutants.
Plant & cell physiology, 66(7):1076-1085 (2025)
Doi.org/10.1093/pcp/pcaf042
Yoneda, K., Uehara, S., Matsuura, T., Mori, I.C., Ito-Inaba, Y., Inaba, T.
Role of salicylic acid in low CO2 response in Arabidopsis.
Plant & cell physiology, 66(7):1005-1019 (2025)
Doi.org/10.1093/pcp/pcaf052
Tsuchiya, Y., Katsuhara, M., Sasaki, T., Yamamoto, Y.
Oxygen supply is a prerequisite for response to aluminum in cultured cells of tobacco (Nicotiana tabacum).
Plant & cell physiology, 66(7):1044-1060 (2025)
Doi.org/10.1093/pcp/pcaf055
Sakamoto, W.
Thylakostasis: Key Factors in Thylakoid Membrane Organization with Emphasis on Biogenesis and Remodeling Proteins in Vascular Plants.
Plant & cell physiology, pcaf098 (2025)
Doi.org/10.1093/pcp/pcaf098
Yin, Y., Hayashi, Y., Sirajam, M., Munemasa, S., Nakamura, Y., Kinoshita, T., Murata, Y., Mori, I.C.
ABA Receptor Isoforms Differently Regulate Stomatal Movements and Generation of Reactive Oxygen Species in ABA Signaling in Arabidopsis Guard Cells.
Plant & cell physiology, pcaf102 (2025)
Doi.org/10.1093/pcp/pcaf102
Shen, J., Shikanai, T., Li, M., Ermakova, M., Sakamoto, W.
Editorial: Special Issue on Photosynthesis - the basics, mechanisms and applications.
Plant & cell physiology, pcaf141 (2025)
Doi.org/10.1093/pcp/pcaf141
Emrich-Mills, T.Z., Proctor, M.S., Degen, G.E., Jackson, P.J., Richardson, K.H., Hawkings, F.R., Buchert, F., Hitchcock, A., Hunter, C.N., Mackinder, L.C.M., Hippler, M., Johnson, M.P.
Tethering ferredoxin-NADP+ reductase to photosystem I promotes photosynthetic cyclic electron transfer.
The Plant cell, 37(3):10.1093/plcell/koaf042 (2025)
Doi.org/10.1093/plcell/koaf042
Nagaki, K., Ushijima, K., Akagi, T., Tanaka, K., Kobayashi, H.
Pancentromere analysis of Allium species reveals diverse centromere positions in onion and gigantic centromeres in garlic.
The Plant cell, 37(7):10.1093/plcell/koaf142 (2025)
Doi.org/10.1093/plcell/koaf142
Gachie, S.W., Muhire, A., Li, D., Kawamoto, A., Takeda-Kamiya, N., Goto, Y., Sato, M., Toyooka, K., Yoshimura, R., Takami, T., Zhang, L., Kurisu, G., Terachi, T., Sakamoto, W.
The thylakoid membrane remodeling protein VIPP1 forms bundled oligomers in tobacco chloroplasts.
Plant physiology, 198(1):10.1093/plphys/kiaf137 (2025)
Doi.org/10.1093/plphys/kiaf137
Konishi, N., Mitani-Ueno, N., Ma, J.F.
Role of polar localization of the silicon transporter OsLsi1 in metalloid uptake by rice roots.
Plant physiology, 198(1):10.1093/plphys/kiaf196 (2025)
Doi.org/10.1093/plphys/kiaf196
Milrad, Y., Wegemann, D., Kuhlgert, S., Scholz, M., Younas, M., Vidal-Meireles, A., Hippler, M.
Insights into plastocyanin-cytochrome b6f complex formation: The role of plastocyanin phosphorylation.
Plant physiology, 198(4):10.1093/plphys/kiaf269 (2025)
Doi.org/10.1093/plphys/kiaf269
Ma, L., Dong, B., Sun, M., Hao, R., Wang, X., Yu, H., Han, C., Muhire, A., Gachie, S.W., Li, D., Sakamoto, W., Zhang, L.
VESICLE-INDUCING PROTEIN IN PLASTIDS 1 from thylakoid-lacking Gloeobacter promotes thylakoid formation in Arabidopsis.
Plant physiology, 199(1):kiaf359 (2025)
Doi.org/10.1093/plphys/kiaf359
Mayne, R., Simmonds, P., Smith, D.B., Adriaenssens, E.M., Lefkowitz, E.J., Oksanen, H.M., Zerbini, F.M., Alfenas-Zerbini, P., Aylward, F.O., Freitas-Astua, J., Hendrickson, R.C., Hughes, H.R., Krupovic, M., Kuhn, J.H., Lobocka, M., Mushegian, A.R., Penzes, J., Munoz, A.R., Robertson, D.L., Roux, S., Rubino, L., Sabanadzovic, S., Suzuki, N., Turner, D., Van Doorslaer, K., Varsani, A.
Virus taxonomy proposal summaries: a searchable and citable resource to disseminate virus taxonomy advances.
The Journal of general virology, 106(7):10.1099/jgv.0.002079 (2025)
Doi.org/10.1099/jgv.0.002079
Hughes, H.R., Ballinger, M.J., Bao, Y., Bejerman, N., Blasdell, K.R., Briese, T., Brignone, J., Carrera, J.P., De Coninck, L., de Souza, W.M., Debat, H., Dietzgen, R.G., Durrwald, R., Erdin, M., Fooks, A.R., Forbes, K.M., Freitas-Astua, J., Garcia, J.B., Geoghegan, J.L., Grimwood, R.M., Horie, M., Hyndman, T.H., Johne, R., Klena, J.D., Kondo, H., Koonin, E.V., Kostygov, A.Y., Krupovic, M., Kuhn, J.H., Letko, M., Li, J., Liu, Y., Martin, M.L., Mull, N., Nazar, Y., Nowotny, N., Nunes, M.R.T., Okland, A.L., Rubbenstroth, D., Russell, B.J., Schott, E., Seifert, S., Sen, C., Shedroff, E., Sironen, T., Smura, T., Tavares, C.P.D.S., Tesh, R.B., Tilston, N.L., Tordo, N., Vasilakis, N., Walker, P.J., Wang, F., Whitfield, A.E., Whitmer, S.L.M., Wolf, Y.I., Xia, H., Ye, G., Ye, Z., Yurchenko, V., Zhao, M., Ictv Taxonomy Summary Consortium, NA.
Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Animal dsRNA and ssRNA(-) Viruses Subcommittee, 2025.
The Journal of general virology, 106(7):10.1099/jgv.0.002112 (2025)
Doi.org/10.1099/jgv.0.002112
Rubino, L., Abrahamian, P., An, W., Aranda, M.A., Ascencio-Ibanez, J.T., Bejerman, N., Blouin, A.G., Candresse, T., Canto, T., Cao, M., Carr, J.P., Cho, W.K., Constable, F., Dasgupta, I., Debat, H., Dietzgen, R.G., Digiaro, M., Donaire, L., Elbeaino, T., Fargette, D., Filardo, F., Fischer, M.G., Fontdevila, N., Fox, A., Freitas-Astua, J., Fuchs, M., Geering, A.D.W., Ghafari, M., Hafren, A., Hammond, J., Hammond, R., Hasiow-Jaroszewska, B., Hebrard, E., Hernandez, C., Hily, J., Hosseini, A., Hull, R., Inoue-Nagata, A.K., Jordan, R., Kondo, H., Kreuze, J.F., Krupovic, M., Kubota, K., Kuhn, J.H., Leisner, S., Lett, J., Li, C., Li, F., Li, J.M., Lopez-Lambertini, P.M., Lopez-Moya, J.J., Maclot, F., Makinen, K., Martin, D., Massart, S., Miller, W.A., Mohammadi, M., Mollov, D., Muller, E., Nagata, T., Navas-Castillo, J., Neriya, Y., Ochoa-Corona, F.M., Ohshima, K., Pallas, V., Pappu, H., Petrzik, K., Pooggin, M., Prigigallo, M.I., Ramos-Gonzalez, P.L., Ribeiro, S., Richert-Poggeler, K.R., Roumagnac, P., Roy, A., Sabanadzovic, S., Safarova, D., Saldarelli, P., Sanfacon, H., Sarmiento, C., Sasaya, T., Scheets, K., Schravesande, W.E.W., Seal, S., Shimomoto, Y., Somera, M., Stavolone, L., Stewart, L.R., Teycheney, P., Thomas, J.E., Thompson, J.R., Tiberini, A., Tomitaka, Y., Tzanetakis, I., Umber, M., Urbino, C., van den Burg, H.A., Van der Vlugt, R.A.A., Varsani, A., Verhage, A., Villamor, D., von Bargen, S., Walker, P.J., Wetzel, T., Whitfield, A.E., Wylie, S.J., Yang, C., Zerbini, F.M., Zhang, S., Ictv Taxonomy Summary Consortium, NA.
Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses from the Plant Viruses Subcommittee, 2025.
The Journal of general virology, 106(7):10.1099/jgv.0.002114 (2025)
Doi.org/10.1099/jgv.0.002114
Sabanadzovic, S., Abergel, C., Ayllon, M.A., Botella, L., Canuti, M., Chiba, Y., Claverie, J., Coutts, R.H.A., Daghino, S., Donaire, L., Forgia, M., Hejna, O., Jia, J., Jiang, D., Kotta-Loizou, I., Krupovic, M., Lang, A.S., Legendre, M., Lee Marzano, S., Mu, F., Neri, U., Nerva, L., Penzes, J., Poimala, A., Rigou, S., Sato, Y., Shamsi, W., Sutela, S., Suzuki, N., Turina, M., Urayama, S., Vainio, E.J., Xie, J., Ictv Taxonomy Summary Consortium, NA.
Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Fungal and Protist Viruses Subcommittee, 2025.
The Journal of general virology, 106(7):10.1099/jgv.0.002115 (2025)
Doi.org/10.1099/jgv.0.002115
Sabanadzovic, S., Abergel, C., Ayllon, M.A., Botella, L., Canuti, M., Chiba, Y., Claverie, J., Coutts, R.H.A., Daghino, S., Donaire, L., Forgia, M., Hejna, O., Jia, J., Jiang, D., Kotta-Loizou, I., Krupovic, M., Lang, A.S., Legendre, M., Marzano, S.L., Mu, F., Neri, U., Nerva, L., Penzes, J., Poimala, A., Rigou, S., Sato, Y., Shamsi, W., Sutela, S., Suzuki, N., Turina, M., Urayama, S., Vainio, E.J., Xie, J., Ictv Taxonomy Summary Consortium, NA.
Erratum: Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Fungal and Protist Viruses Subcommittee, 2025.
The Journal of general virology, 106(8):10.1099/jgv.0.002144 (2025)
Doi.org/10.1099/jgv.0.002144
Yamada, H., Bunthara, L.R., Tanaka, A., Kohama, T., Maruyama, H., Tanaka, W., Nishida, S., Tantriani, NA., Oikawa, A., Tawaraya, K., Watanabe, T., Liu, S.T., Finnegan, P.M., Lambers, H., Sasaki, T., Wasaki, J.
HalALMT1 mediates malate efflux in the cortex of mature cluster rootlets of Hakea laurina, occurring naturally in severely phosphorus-impoverished soil.
The New phytologist, 246(6):2597-2616 (2025)
Doi.org/10.1111/nph.70010
Huang, S., Yamaji, N., Konishi, N., Mitani-Ueno, N., Ma, J.F.
Symplastic and apoplastic pathways for local distribution of silicon in rice leaves.
The New phytologist, 247(3):1280-1289 (2025)
Doi.org/10.1111/nph.70110
Ruaud, S., Notzold, S.I., Waller, M., Galbier, F., Mousavi, S.S., Charran, M., Mateos, J.M., Zeeman, S., Baily, A., Baroux, C., Hippler, M., Wicke, S., Szovenyi, P.
Molecular underpinnings of hornwort CO(2) concentrating mechanisms: subcellular localization of putative key molecular components in the model hornwort Anthoceros agrestis.
The New phytologist, 247(3):1244-1262 (2025)
Doi.org/10.1111/nph.70167
Wang, M., Wang, Y., Peng, J., Yu, Y., Wen, T., Liu, Z., Qi, Z., Zhang, X., He, S., Fang, Z., Ma, J., Gong, J.
OsNIP3;1 mediates diurnal boron oscillation at rice vasculature tip.
The New phytologist, 247(3):1493-1502 (2025)
Doi.org/10.1111/nph.70201
Akamatsu, A., Ishikawa, T., Tanaka, H., Kawano, Y., Hayashi, M., Takeda, N.
Accumulation of phosphatidylinositol 4,5-bisphosphate inhibits the excessive infection of rhizobia in Lotus japonicus.
The New phytologist, 248(4):2005-2020 (2025)
Doi.org/10.1111/nph.70527
Huang, H., Yamaji, N., Huang, S., Ma, J.F.
Uptake and Accumulation of Cobalt Is Mediated by OsNramp5 in Rice.
Plant, cell & environment, 48(1):3-14 (2025)
Doi.org/10.1111/pce.15130
Tania, S.S., Utsugi, S., Tsuchiya, Y., Sasano, S., Katsuhara, M., Mori, I.C.
Amino Acid Substitutions in Loop C of Arabidopsis PIP2 Aquaporins Alters the Permeability of CO(2).
Plant, cell & environment, 48(9):6835-6846 (2025)
Doi.org/10.1111/pce.15635
Aboshi, T., Teraishi, M., Galis, I., Yoshikawa, T., Shinya, T.
Natural variation-based genetic screen in rice identifies the isopentylamine biosynthetic gene that modulates brown planthopper behaviour.
Plant biology (Stuttgart, Germany), 27(5):873-882 (2025)
Doi.org/10.1111/plb.70041
Akter, R., Inoue, Y., Masumoto, S., Mimata, Y., Matsuura, T., Mori, I.C., Nakamura, T., Nakamura, Y., Murata, Y., Munemasa, S.
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Possible Biological Control of Ash Dieback Using the Mycoparasite Hymenoscyphus Fraxineus Mitovirus 2.
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Florigen-producing cells express FPF1-LIKE PROTEIN 1 that accelerates flowering and stem growth in long days with sunlight red/far-red ratio in Arabidopsis.
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Decoding the RNA virome of the tree parasite Armillaria provides new insights into the viral community of soil-borne fungi.
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High-efficiency genome editing by Cas12a ribonucleoprotein complex in Euglena gracilis.
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Knockout of a rice K5.2 gene increases Ca accumulation in the grain.
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Local distribution of manganese to leaf sheath is mediated by OsNramp5 in rice.
The New phytologist, 241(4):1708-1719 (2024)
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An oligo peptide transporter family member, OsOPT7, mediates xylem unloading of Fe for its preferential distribution in rice.
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Plant growth-promoting abilities of Methylobacterium sp. 2A involve auxin-mediated regulation of the root architecture.
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Cryptic cytoplasmic male sterility-causing gene in the mitochondrial genome of common japonica rice.
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The Plant journal : for cell and molecular biology, 120(4):1577-1590 (2024)
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New lineages of RNA viruses from clinical isolates of Rhizopus microsporus revealed by fragmented and primer-ligated dsRNA sequencing (FLDS) analysis.
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Development of genomic and genetic resources facilitating molecular genetic studies on untapped Myanmar rice germplasms.
Breeding science, 74(2):124-137 (2024)
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Chromosome-specific barcode system with centromeric repeat in cultivated soybean and wild progenitor.
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Comprehensive analysis of silicon impact on defense and metabolic responses in rice exposed to herbivory stress.
Frontiers in plant science, 15:1399562 (2024)
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Characterization of the far-red light absorbing light-harvesting chlorophyll a/b binding complex, a derivative of the distinctive Lhca gene family in green algae.
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Dysfunction of Chloroplast Protease Activity Mitigates pgr5 Phenotype in the Green Algae Chlamydomonas reinhardtii.
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Chemical Protein Crosslinking-Coupled Mass Spectrometry Reveals Interaction of LHCI with LHCII and LHCSR3 in Chlamydomonas reinhardtii.
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Light-Driven H(2) Production in Chlamydomonas reinhardtii: Lessons from Engineering of Photosynthesis.
Plants (Basel, Switzerland), 13(15):10.3390/plants13152114 (2024)
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An investigation of the pigments, antioxidants and free radical scavenging potential of twenty medicinal weeds found in the southern part of Bangladesh.
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CRISPR-FISH: A CRISPR/Cas9-Based In Situ Labeling Method.
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Matsushima, R., Hisano, H., Galis, I., Miura, S., Crofts, N., Takenaka, Y., Oitome, N.F., Ishimizu, T., Fujita, N., Sato, K.
FLOURY ENDOSPERM 6 mutations enhance the sugary phenotype caused by the loss of ISOAMYLASE1 in barley.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 136(4):94 (2023)
Doi.org/10.1007/s00122-023-04339-5
Raco, M., Jung, T., Horta Jung, M., Chi, N.M., Botella, L., Suzuki, N.
Sequence and phylogenetic analysis of a novel alphaendornavirus, the first virus described from the oomycete plant pathogen Phytophthora heveae.
Archives of virology, 168(6):158 (2023)
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Zerbini, F.M., Siddell, S.G., Lefkowitz, E.J., Mushegian, A.R., Adriaenssens, E.M., Alfenas-Zerbini, P., Dempsey, D.M., Dutilh, B.E., Garcia, M.L., Hendrickson, R.C., Junglen, S., Krupovic, M., Kuhn, J.H., Lambert, A.J., Lobocka, M., Oksanen, H.M., Robertson, D.L., Rubino, L., Sabanadzovic, S., Simmonds, P., Smith, D.B., Suzuki, N., Van Doorslaer, K., Vandamme, A., Varsani, A.
Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2023).
Archives of virology, 168(7):175 (2023)
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Cao, X., Wang, Z., Pang, J., Sun, L., Kondo, H., Andika, I.B.
Identification of a novel dicistro-like virus associated with the roots of tomato plants.
Archives of virology, 168(8):214 (2023)
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Zerbini, F.M., Siddell, S.G., Lefkowitz, E.J., Mushegian, A.R., Adriaenssens, E.M., Alfenas-Zerbini, P., Dempsey, D.M., Dutilh, B.E., Garcia, M.L., Hendrickson, R.C., Junglen, S., Krupovic, M., Kuhn, J.H., Lambert, A.J., Lobocka, M., Oksanen, H.M., Robertson, D.L., Rubino, L., Sabanadzovic, S., Simmonds, P., Smith, D.B., Suzuki, N., Van Doorslaer, K., Vandamme, A., Varsani, A.
Correction to: Changes to virus taxonomy and the ICTV Statutes ratifed by the International Committee on Taxonomy of Viruses (2023).
Archives of virology, 168(11):269 (2023)
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Tazawa, M., Katsuhara, M., Wayne, R.
Calcium control of the hydraulic resistance in cells of Chara corallina.
Protoplasma, 260(1):299-306 (2023)
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Sakaba, T., Soejima, A., Fujii, S., Ikeda, H., Iwasaki, T., Saito, H., Suyama, Y., Matsuo, A., Kozhevnikov, A.E., Kozhevnikova, Z.V., Wang, H., Wang, S., Pak, J., Fujii, N.
Phylogeography of the temperate grassland plant Tephroseris kirilowii (Asteraceae) inferred from multiplexed inter-simple sequence repeat genotyping by sequencing (MIG-seq) data.
Journal of plant research, 136(4):437-452 (2023)
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Ikeda, H.
Virtual issue: phylogeographic studies in the Japanese Archipelago: from geographic patterns of genetic variation to biodiversity in plants.
Journal of plant research, 136(5):581-585 (2023)
Doi.org/10.1007/s10265-023-01478-0
Wang, P., Ma, J.F.
Knockout of a gene encoding a Ggamma protein boosts alkaline tolerance in cereal crops.
aBIOTECH, 4(2):180-183 (2023)
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Sato, M., Seki, M., Suzuki, Y., Ueki, S.
The dataset of de novo assembly and inferred functional annotation of the transcriptome of Heterosigma akashiwo, a bloom-forming, cosmopolitan raphidophyte.
Data in brief, 48:109071 (2023)
Doi.org/10.1016/j.dib.2023.109071
Lv, H., Huo, S., Zhao, L., Zhang, H., Liu, Y., Liu, S., Tani, A., Wang, R.
Preparation and application of cinnamon-Litsea cubeba compound essential oil microcapsules for peanut kernel postharvest storage.
Food chemistry, 415:135734 (2023)
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Kim, J., Takahagi, K., Inoue, K., Shimizu, M., Uehara-Yamaguchi, Y., Kanatani, A., Saisho, D., Nishii, R., Lipka, A.E., Hirayama, T., Sato, K., Mochida, K.
Exome-wide variation in a diverse barley panel reveals genetic associations with ten agronomic traits in Eastern landraces.
Journal of genetics and genomics = Yi chuan xue bao, 50(4):241-252 (2023)
Doi.org/10.1016/j.jgg.2022.12.001
Sato, Y., Suzuki, N.
Continued mycovirus discovery expanding our understanding of virus lifestyles, symptom expression, and host defense.
Current opinion in microbiology, 75:102337 (2023)
Doi.org/10.1016/j.mib.2023.102337
Ushio, M., Ishikawa, T., Matsuura, T., Mori, I.C., Kawai-Yamada, M., Fukao, Y., Nagano, M.
MHP1 and MHL generate odd-chain fatty acids from 2-hydroxy fatty acids in sphingolipids and are related to immunity in Arabidopsis thaliana.
Plant science : an international journal of experimental plant biology, 336:111840 (2023)
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Sommer, K., Reuter, S., Elinkmann, M., Kohrer, A., Quarles, C.D.J., Hippler, M., Karst, U.
Species-dependent uptake of gadolinium in Chlamydomonas reinhardtii algae.
The Science of the total environment, 905:166909 (2023)
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Sakamoto, W., Takami, T.
Maternal plastid inheritance: two abating factors identified.
Trends in genetics : TIG, 39(5):342-343 (2023)
Doi.org/10.1016/j.tig.2023.03.002
Sato, Y., Shahi, S., Telengech, P., Hisano, S., Cornejo, C., Rigling, D., Kondo, H., Suzuki, N.
Corrigendum to 'A new tetra-segmented splipalmivirus with divided RdRP domains from Cryphonectria naterciae, a fungus found on chestnut and cork oak trees in Europe' [Virus Research 307 (2022) 198606].
Virus research, 324:199013 (2023)
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Sato, Y., Hisano, S., Suzuki, N.
Exploration of the yadokari/yadonushi nature of YkV3 and RnMBV3 in the original host and a model filamentous fungus.
Virus research, 334:199155 (2023)
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Sato, Y., Shahi, S., Telengech, P., Hisano, S., Cornejo, C., Rigling, D., Kondo, H., Suzuki, N.
Corrigendum to 'A new tetra-segmented splipalmivirus with divided RdRP domains from Cryphonectria naterciae, a fungus found on chestnut and cork oak trees in Europe' [Virus Research 291 (2021) 198221].
Virus research, 337:199228 (2023)
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Mori, I.C., Matsuura, T., Otao, M., Ooi, L., Nishimura, Y., Hirayama, T.
Application of Trehalose Mitigates Short-Styled Flowers in Solanaceous Crops.
Journal of agricultural and food chemistry, 71(14):5476-5482 (2023)
Doi.org/10.1021/acs.jafc.2c08479
Mitani-Ueno, N., Yamaji, N., Huang, S., Yoshioka, Y., Miyaji, T., Ma, J.F.
A silicon transporter gene required for healthy growth of rice on land.
Nature communications, 14(1):6522 (2023)
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Hirano, T., Okamoto, A., Oda, Y., Sakamoto, T., Takeda, S., Matsuura, T., Ikeda, Y., Higaki, T., Kimura, S., Sato, M.H.
Ab-GALFA, A bioassay for insect gall formation using the model plant Arabidopsis thaliana.
Scientific reports, 13(1):2554 (2023)
Doi.org/10.1038/s41598-023-29302-8
Mega, R., Kim, J., Tanaka, H., Ishii, T., Abe, F., Okamoto, M.
Metabolic and transcriptomic profiling during wheat seed development under progressive drought conditions.
Scientific reports, 13(1):15001 (2023)
Doi.org/10.1038/s41598-023-42093-2
Younas, M., Scholz, M., Marchetti, G.M., Hippler, M.
Remodeling of algal photosystem I through phosphorylation.
Bioscience reports, 43(1):10.1042/BSR20220369 (2023)
Doi.org/10.1042/BSR20220369
Kojima, M., Makita, N., Miyata, K., Yoshino, M., Iwase, A., Ohashi, M., Surjana, A., Kudo, T., Takeda-Kamiya, N., Toyooka, K., Miyao, A., Hirochika, H., Ando, T., Shomura, A., Yano, M., Yamamoto, T., Hobo, T., Sakakibara, H.
A cell wall-localized cytokinin/purine riboside nucleosidase is involved in apoplastic cytokinin metabolism in Oryza sativa.
Proceedings of the National Academy of Sciences of the United States of America, 120(36):e2217708120 (2023)
Doi.org/10.1073/pnas.2217708120
Akiyama, K., Ozawa, S., Takahashi, Y., Yoshida, K., Suzuki, T., Kondo, K., Wakabayashi, K., Hisabori, T.
Two specific domains of the gamma subunit of chloroplast F(o)F(1) provide redox regulation of the ATP synthesis through conformational changes.
Proceedings of the National Academy of Sciences of the United States of America, 120(6):e2218187120 (2023)
Doi.org/10.1073/pnas.2218187120
Osinde, C., Sobhy, I.S., Wari, D., Dinh, S.T., Hojo, Y., Osibe, D.A., Shinya, T., Tugume, A.K., Nsubuga, A.M., Galis, I.
Comparative analysis of sorghum (C4) and rice (C3) plant headspace volatiles induced by artificial herbivory.
Plant signaling & behavior, 18(1):2243064 (2023)
Doi.org/10.1080/15592324.2023.2243064
Morita, S., Tamba, N., Shibasaka, M., Sasano, S., Kadoike, T., Urase, Y., Maruyama, M., Fukuoka, A., Yanai, J., Masumura, T., Ogihara, Y., Satoh, S., Tanaka, K., Katsuhara, M., Nakayama, H.
In planta evidence that the HAK transporter OsHAK2 is involved in Na+ transport in rice.
Bioscience, biotechnology, and biochemistry, 87(5):482-490 (2023)
Doi.org/10.1093/bbb/zbad020
Zhao, M., Nakamura, T., Nakamura, Y., Munemasa, S., Mori, I.C., Murata, Y.
The effect of exogenous dihydroxyacetone and methylglyoxal on growth, anthocyanin accumulation, and the glyoxalase system in Arabidopsis.
Bioscience, biotechnology, and biochemistry, 87(11):1323-1331 (2023)
Doi.org/10.1093/bbb/zbad109
Furuta, T., Yamamoto, T., Ashikari, M.
GBScleanR: robust genotyping error correction using a hidden Markov model with error pattern recognition.
Genetics, 224(2):10.1093/genetics/iyad055 (2023)
Doi.org/10.1093/genetics/iyad055
Wang, P., Jia, H., Guo, T., Zhang, Y., Wang, W., Nishimura, H., Li, Z., Kawano, Y.
The secreted immune response peptide 1 functions as a phytocytokine in rice immunity.
Journal of experimental botany, 74(3):1059-1073 (2023)
Doi.org/10.1093/jxb/erac455
Chang, J., Huang, S., Wiseno, I., Sui, F., Feng, F., Zheng, L., Ma, J.F., Zhao, F.
Dissecting the promotional effect of zinc on cadmium translocation from roots to shoots in rice.
Journal of experimental botany, 74(21):6790-6803 (2023)
Doi.org/10.1093/jxb/erad330
Hirayama, T., Mochida, K.
Plant Hormonomics: A Key Tool for Deep Physiological Phenotyping to Improve Crop Productivity.
Plant & cell physiology, 63(12):1826-1839 (2023)
Doi.org/10.1093/pcp/pcac067
Okegawa, Y.
PCP Research Highlights: Regulatory Role of Three Important Post-Translational Modifications in Chloroplast Proteins.
Plant & cell physiology, 64(10):1119-1123 (2023)
Doi.org/10.1093/pcp/pcad097
Konishi, N., Mitani-Ueno, N., Yamaji, N., Ma, J.F.
Polar localization of a rice silicon transporter requires isoleucine at both C- and N-termini as well as positively charged residues.
The Plant cell, 35(6):2232-2250 (2023)
Doi.org/10.1093/plcell/koad073
Ozawa, S., Buchert, F., Reuys, R., Hippler, M., Takahashi, Y.
Algal PETC-Pro171-Leu suppresses electron transfer in cytochrome b6f under acidic lumenal conditions.
Plant physiology, 191(3):1803-1817 (2023)
Doi.org/10.1093/plphys/kiac575
Zinzius, K., Marchetti, G.M., Fischer, R., Milrad, Y., Oltmanns, A., Kelterborn, S., Yacoby, I., Hegemann, P., Scholz, M., Hippler, M.
Calredoxin regulates the chloroplast NADPH-dependent thioredoxin reductase in Chlamydomonas reinhardtii.
Plant physiology, 193(3):2122-2140 (2023)
Doi.org/10.1093/plphys/kiad426
Okegawa, Y., Sato, N., Nakakura, R., Murai, R., Sakamoto, W., Motohashi, K.
x- and y-type thioredoxins maintain redox homeostasis on photosystem I acceptor side under fluctuating light.
Plant physiology, 193(4):2498-2512 (2023)
Doi.org/10.1093/plphys/kiad466
Sato, Y., Turina, M., Chiba, S., Okada, R., Bhatti, M.F., Kotta-Loizou, I., Coutts, R.H.A., Kondo, H., Sabanadzovic, S., Suzuki, N., Ictv Report Consortium, NA.
ICTV Virus Taxonomy Profile: Hadakaviridae 2023.
The Journal of general virology, 104(1):10.1099/jgv.0.001820 (2023)
Doi.org/10.1099/jgv.0.001820
Sato, Y., Das, S., Velasco, L., Turina, M., Osaki, H., Kotta-Loizou, I., Coutts, R.H.A., Kondo, H., Sabanadzovic, S., Suzuki, N., Ictv Report Consortium, NA.
ICTV Virus Taxonomy Profile: Yadokariviridae 2023.
The Journal of general virology, 104(1):10.1099/jgv.0.001826 (2023)
Doi.org/10.1099/jgv.0.001826
Siddell, S.G., Smith, D.B., Adriaenssens, E., Alfenas-Zerbini, P., Dutilh, B.E., Garcia, M.L., Junglen, S., Krupovic, M., Kuhn, J.H., Lambert, A.J., Lefkowitz, E.J., Lobocka, M., Mushegian, A.R., Oksanen, H.M., Robertson, D.L., Rubino, L., Sabanadzovic, S., Simmonds, P., Suzuki, N., Van Doorslaer, K., Vandamme, A., Varsani, A., Zerbini, F.M.
Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV).
The Journal of general virology, 104(5):10.1099/jgv.0.001840 (2023)
Doi.org/10.1099/jgv.0.001840
Chiba, S., Velasco, L., Ayllon, M.A., Suzuki, N., Lee-Marzano, S., Sun, L., Sabanadzovic, S., Turina, M.
ICTV Virus Taxonomy Profile: Hypoviridae 2023.
The Journal of general virology, 104(5):10.1099/jgv.0.001848 (2023)
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Gao, L.J., Liu, X.P., Gao, K.K., Cui, M.Q., Zhu, H.H., Li, G.X., Yan, J.Y., Wu, Y.R., Ding, Z.J., Chen, X.W., Ma, J.F., Harberd, N.P., Zheng, S.J.
ART1 and putrescine contribute to rice aluminum resistance via OsMYB30 in cell wall modification.
Journal of integrative plant biology, 65(4):934-949 (2023)
Doi.org/10.1111/jipb.13429
Iida, J., Desaki, Y., Hata, K., Uemura, T., Yasuno, A., Islam, M., Maffei, M.E., Ozawa, R., Nakajima, T., Galis, I., Arimura, G.
Corrigendum.
The New phytologist, 238(6):2698-2699 (2023)
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Ning, M., Liu, S.J., Deng, F., Huang, L., Li, H., Che, J., Yamaji, N., Hu, F., Lei, G.J.
A vacuolar transporter plays important roles in zinc and cadmium accumulation in rice grain.
The New phytologist, 239(5):1919-1934 (2023)
Doi.org/10.1111/nph.19070
Ube, N., Ishihara, A., Yabuta, Y., Taketa, S., Kato, Y., Nomura, T.
Molecular identification of a laccase that catalyzes the oxidative coupling of a hydroxycinnamic acid amide for hordatine biosynthesis in barley.
The Plant journal : for cell and molecular biology, 115(4):1037-1050 (2023)
Doi.org/10.1111/tpj.16278
Kimura, S., Vaattovaara, A., Ohshita, T., Yokoyama, K., Yoshida, K., Hui, A., Kaya, H., Ozawa, A., Kobayashi, M., Mori, I.C., Ogata, Y., Ishino, Y., Sugano, S.S., Nagano, M., Fukao, Y.
Zinc deficiency-induced defensin-like proteins are involved in the inhibition of root growth in Arabidopsis.
The Plant journal : for cell and molecular biology, 115(4):1071-1083 (2023)
Doi.org/10.1111/tpj.16281
Andika, I.B., Tian, M., Bian, R., Cao, X., Luo, M., Kondo, H., Sun, L.
Cross-Kingdom Interactions Between Plant and Fungal Viruses.
Annual review of virology, 10(1):119-138 (2023)
Doi.org/10.1146/annurev-virology-111821-122539
Kamal, N.M., Gorafi, Y.S.A., Tomemori, H., Kim, J., Elhadi, G.M.I., Tsujimoto, H.
Genetic variation for grain nutritional profile and yield potential in sorghum and the possibility of selection for drought tolerance under irrigated conditions.
BMC genomics, 24(1):515 (2023)
Doi.org/10.1186/s12864-023-09613-w
Ichiyanagi, K., Ikeda, Y., Saito, K.
The sixth Japanese meeting on biological function and evolution through interactions between hosts and transposable elements.
Mobile DNA, 14(1):22 (2023)
Doi.org/10.1186/s13100-023-00310-9
Taketa, S., Kim, J., Takahashi, H., Yajima, S., Koshiishi, Y., Sotome, T., Kato, T., Mochida, K.
Genomic traces of Japanese malting barley breeding in two modern high-quality cultivars, 'Sukai Golden' and 'Sachiho Golden'.
Breeding science, 73(5):435-444 (2023)
Doi.org/10.1270/jsbbs.23031
Simmonds, P., Adriaenssens, E.M., Zerbini, F.M., Abrescia, N.G.A., Aiewsakun, P., Alfenas-Zerbini, P., Bao, Y., Barylski, J., Drosten, C., Duffy, S., Duprex, W.P., Dutilh, B.E., Elena, S.F., Garcia, M.L., Junglen, S., Katzourakis, A., Koonin, E.V., Krupovic, M., Kuhn, J.H., Lambert, A.J., Lefkowitz, E.J., Lobocka, M., Lood, C., Mahony, J., Meier-Kolthoff, J.P., Mushegian, A.R., Oksanen, H.M., Poranen, M.M., Reyes-Munoz, A., Robertson, D.L., Roux, S., Rubino, L., Sabanadzovic, S., Siddell, S., Skern, T., Smith, D.B., Sullivan, M.B., Suzuki, N., Turner, D., Van Doorslaer, K., Vandamme, A., Varsani, A., Vasilakis, N.
Four principles to establish a universal virus taxonomy.
PLoS biology, 21(2):e3001922 (2023)
Doi.org/10.1371/journal.pbio.3001922
Degu, H.D., Tehelku, T.F., Kalousova, M., Sato, K.
Genetic diversity and population structure of barley landraces from Southern Ethiopia's Gumer district: Utilization for breeding and conservation.
PloS one, 18(1):e0279737 (2023)
Doi.org/10.1371/journal.pone.0279737
Michikawa, A., Okada, M., Ikeda, T.M., Nagaki, K., Yoshida, K., Takumi, S.
Phenotypic effects of Am genomes in nascent synthetic hexaploids derived from interspecific crosses between durum and wild einkorn wheat.
PloS one, 18(4):e0284408 (2023)
Doi.org/10.1371/journal.pone.0284408
Wang, H., Salaipeth, L., Miyazaki, N., Suzuki, N., Okamoto, K.
Capsid structure of a fungal dsRNA megabirnavirus reveals its previously unidentified surface architecture.
PLoS pathogens, 19(2):e1011162 (2023)
Doi.org/10.1371/journal.ppat.1011162
Andika, I.B., Cao, X., Kondo, H., Sun, L.
The intriguing phenomenon of cross-kingdom infections of plant and insect viruses to fungi: Can other animal viruses also cross-infect fungi?.
PLoS pathogens, 19(10):e1011726 (2023)
Doi.org/10.1371/journal.ppat.1011726
Tani, A., Masuda, S., Fujitani, Y., Iga, T., Haruna, Y., Kikuchi, S., Shuaile, W., Lv, H., Katayama, S., Yurimoto, H., Sakai, Y., Kato, J.
Metabolism-linked methylotaxis sensors responsible for plant colonization in Methylobacterium aquaticum strain 22A.
Frontiers in microbiology, 14:1258452 (2023)
Doi.org/10.3389/fmicb.2023.1258452
Uchida, K., Kim, J., Sato, M., Tabeta, H., Mochida, K., Hirai, M.Y.
A metabolome genome-wide association study implicates histidine N-pi-methyltransferase as a key enzyme in N-methylhistidine biosynthesis in Arabidopsis thaliana.
Frontiers in plant science, 14:1201129 (2023)
Doi.org/10.3389/fpls.2023.1201129
Ogawa, Y., Iwano, M., Shikanai, T., Sakamoto, W.
FZL, a dynamin-like protein localized to curved grana edges, is required for efficient photosynthetic electron transfer in Arabidopsis.
Frontiers in plant science, 14:1279699 (2023)
Doi.org/10.3389/fpls.2023.1279699
Kanda, Y., Shinya, T., Maeda, S., Mujiono, K., Hojo, Y., Tomita, K., Okada, K., Kamakura, T., Galis, I., Mori, M.
BSR1, a Rice Receptor-like Cytoplasmic Kinase, Positively Regulates Defense Responses to Herbivory.
International journal of molecular sciences, 24(12):10.3390/ijms241210395 (2023)
Doi.org/10.3390/ijms241210395
Kondo, H., Sugahara, H., Fujita, M., Hyodo, K., Andika, I.B., Hisano, H., Suzuki, N.
Discovery and Genome Characterization of a Closterovirus from Wheat Plants with Yellowing Leaf Symptoms in Japan.
Pathogens (Basel, Switzerland), 12(3):10.3390/pathogens12030358 (2023)
Doi.org/10.3390/pathogens12030358
Purwestri, Y.A., Nurbaiti, S., Putri, S.P.M., Wahyuni, I.M., Yulyani, S.R., Sebastian, A., Nuringtyas, T.R., Yamaguchi, N.
Seed Halopriming: A Promising Strategy to Induce Salt Tolerance in Indonesian Pigmented Rice.
Plants (Basel, Switzerland), 12(15):10.3390/plants12152879 (2023)
Doi.org/10.3390/plants12152879
Cornejo, C., Otani, T., Suzuki, N., Beenken, L.
Cryphonectria carpinicola discovered in Japan: first report of the sexual state on Carpinus tree.
Mycoscience, 64(5):123-127 (2023)
Doi.org/10.47371/mycosci.2023.07.001
Kishi-Kaboshi, M., Abe, F., Kamiya, Y., Kawaura, K., Hisano, H., Sato, K.
Optimizing genome editing efficiency in wheat: Effects of heat treatments and different promoters for single guide RNA expression.
Plant biotechnology (Tokyo, Japan), 40(3):237-245 (2023)
Doi.org/10.5511/plantbiotechnology.23.0717a
Iida, E., Kuriyama, K., Tabara, M., Takeda, A., Suzuki, N., Moriyama, H., Fukuhara, T.
Structural features of T-DNA that induce transcriptional gene silencing during agroinfiltration.
Plant biotechnology (Tokyo, Japan), 40(4):289-299 (2023)
Doi.org/10.5511/plantbiotechnology.23.0719a
Kato, Y., Kuroda, H., Ozawa, S., Saito, K., Dogra, V., Scholz, M., Zhang, G., de Vitry, C., Ishikita, H., Kim, C., Hippler, M., Takahashi, Y., Sakamoto, W.
Characterization of tryptophan oxidation affecting D1 degradation by FtsH in the photosystem II quality control of chloroplasts.
eLife, 12:10.7554/eLife.88822 (2023)
Doi.org/10.7554/eLife.88822
2022
Khan, H.A., Sato, Y., Kondo, H., Jamal, A., Bhatti, M.F., Suzuki, N.
A novel victorivirus from the phytopathogenic fungus Neofusicoccum parvum.
Archives of virology, 167(3):923-929 (2022)
Doi.org/10.1007/s00705-021-05304-7
Zerbini, F.M., Siddell, S.G., Mushegian, A.R., Walker, P.J., Lefkowitz, E.J., Adriaenssens, E.M., Alfenas-Zerbini, P., Dutilh, B.E., Garcia, M.L., Junglen, S., Krupovic, M., Kuhn, J.H., Lambert, A.J., Lobocka, M., Oksanen, H.M., Robertson, D.L., Rubino, L., Sabanadzovic, S., Simmonds, P., Suzuki, N., Van Doorslaer, K., Vandamme, A., Varsani, A.
Differentiating between viruses and virus species by writing their names correctly.
Archives of virology, 167(4):1231-1234 (2022)
Doi.org/10.1007/s00705-021-05323-4
Telengech, P., Shahi, S., Kondo, H., Suzuki, N.
A novel deltapartitivirus from red clover.
Archives of virology, 167(4):1201-1204 (2022)
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Walker, P.J., Siddell, S.G., Lefkowitz, E.J., Mushegian, A.R., Adriaenssens, E.M., Alfenas-Zerbini, P., Dempsey, D.M., Dutilh, B.E., Garcia, M.L., Curtis Hendrickson, R., Junglen, S., Krupovic, M., Kuhn, J.H., Lambert, A.J., Lobocka, M., Oksanen, H.M., Orton, R.J., Robertson, D.L., Rubino, L., Sabanadzovic, S., Simmonds, P., Smith, D.B., Suzuki, N., Van Doorslaer, K., Vandamme, A., Varsani, A., Zerbini, F.M.
Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022).
Archives of virology, 167(11):2429-2440 (2022)
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Khan, H.A., Kondo, H., Shahi, S., Bhatti, M.F., Suzuki, N.
Identification of novel totiviruses from the ascomycetous fungus Geotrichum candidum.
Archives of virology, 167(12):2833-2838 (2022)
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Maeda, H., Takahashi, K., Ueno, Y., Sakata, K., Yokoyama, A., Yarimizu, K., Myouga, F., Shinozaki, K., Ozawa, S., Takahashi, Y., Tanaka, A., Ito, H., Akimoto, S., Takabayashi, A., Tanaka, R.
Characterization of photosystem II assembly complexes containing ONE-HELIX PROTEIN1 in Arabidopsis thaliana.
Journal of plant research, 135(2):361-376 (2022)
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Ikeda, H.
Decades-long phylogeographic issues: complex historical processes and ecological factors on genetic structure of alpine plants in the Japanese Archipelago.
Journal of plant research, 135(2):191-201 (2022)
Doi.org/10.1007/s10265-022-01377-w
Okegawa, Y., Sakamoto, W., Motohashi, K.
Functional division of f-type and m-type thioredoxins to regulate the Calvin cycle and cyclic electron transport around photosystem I.
Journal of plant research, 135(4):543-553 (2022)
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Valea, I., Motegi, A., Kawamura, N., Kawamoto, K., Miyao, A., Ozawa, R., Takabayashi, J., Gomi, K., Nemoto, K., Nozawa, A., Sawasaki, T., Shinya, T., Galis, I., Miyamoto, K., Nojiri, H., Okada, K.
The rice wound-inducible transcription factor RERJ1 sharing same signal transduction pathway with OsMYC2 is necessary for defense response to herbivory and bacterial blight.
Plant molecular biology, 109(4-5):651-666 (2022)
Doi.org/10.1007/s11103-021-01186-0
Shinya, T., Miyamoto, K., Uchida, K., Hojo, Y., Yumoto, E., Okada, K., Yamane, H., Galis, I.
Chitooligosaccharide elicitor and oxylipins synergistically elevate phytoalexin production in rice.
Plant molecular biology, 109(4-5):595-609 (2022)
Doi.org/10.1007/s11103-021-01217-w
Nagamatsu, S., Wada, T., Matsushima, R., Fujita, N., Miura, S., Crofts, N., Hosaka, Y., Yamaguchi, O., Kumamaru, T.
Mutation in BEIIb mitigates the negative effect of the mutation in ISA1 on grain filling and amyloplast formation in rice.
Plant molecular biology, 108(4-5):497-512 (2022)
Doi.org/10.1007/s11103-022-01242-3
Marchetti, G.M., Fusser, F., Singh, R.K., Brummel, M., Koch, O., Kummel, D., Hippler, M.
Structural analysis revealed a novel conformation of the NTRC reductase domain from Chlamydomonas reinhardtii.
Journal of structural biology, 214(1):107829 (2022)
Doi.org/10.1016/j.jsb.2021.107829
Xu, Z., Cai, M., Yang, Y., You, T., Ma, J.F., Wang, P., Zhao, F.
The ferroxidases LPR1 and LPR2 control iron translocation in the xylem of Arabidopsis plants.
Molecular plant, 15(12):1962-1975 (2022)
Doi.org/10.1016/j.molp.2022.11.003
Wang, Q., Kawano, Y.
Improving disease resistance to rice false smut without yield penalty by manipulating the expression of effector target.
Molecular plant, 15(12):1834-1837 (2022)
Doi.org/10.1016/j.molp.2022.11.009
Sato, Y., Shahi, S., Telengech, P., Hisano, S., Cornejo, C., Rigling, D., Kondo, H., Suzuki, N.
A new tetra-segmented splipalmivirus with divided RdRP domains from Cryphonectria naterciae, a fungus found on chestnut and cork oak trees in Europe.
Virus research, 307:198606 (2022)
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Shamsi, W., Kondo, H., Ulrich, S., Rigling, D., Prospero, S.
Novel RNA viruses from the native range of Hymenoscyphus fraxineus, the causal fungal agent of ash dieback.
Virus research, 320:198901 (2022)
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Matsumura, M., Nomoto, M., Itaya, T., Aratani, Y., Iwamoto, M., Matsuura, T., Hayashi, Y., Mori, T., Skelly, M.J., Yamamoto, Y.Y., Kinoshita, T., Mori, I.C., Suzuki, T., Betsuyaku, S., Spoel, S.H., Toyota, M., Tada, Y.
Mechanosensory trichome cells evoke a mechanical stimuli-induced immune response in Arabidopsis thaliana.
Nature communications, 13(1):1216 (2022)
Doi.org/10.1038/s41467-022-28813-8
Masuda, K., Ikeda, Y., Matsuura, T., Kawakatsu, T., Tao, R., Kubo, Y., Ushijima, K., Henry, I.M., Akagi, T.
Reinvention of hermaphroditism via activation of a RADIALIS-like gene in hexaploid persimmon.
Nature plants, 8(3):217-224 (2022)
Doi.org/10.1038/s41477-022-01107-z
Naschberger, A., Mosebach, L., Tobiasson, V., Kuhlgert, S., Scholz, M., Perez-Boerema, A., Ho, T.T.H., Vidal-Meireles, A., Takahashi, Y., Hippler, M., Amunts, A.
Algal photosystem I dimer and high-resolution model of PSI-plastocyanin complex.
Nature plants, 8(10):1191-1201 (2022)
Doi.org/10.1038/s41477-022-01253-4
Nakayama, R., Safi, M.T., Ahmadzai, W., Sato, K., Kawaura, K.
Comparative transcriptome analysis of synthetic and common wheat in response to salt stress.
Scientific reports, 12(1):11534 (2022)
Doi.org/10.1038/s41598-022-15733-2
Yu, E., Wang, W., Yamaji, N., Fukuoka, S., Che, J., Ueno, D., Ando, T., Deng, F., Hori, K., Yano, M., Shen, R.F., Ma, J.F.
Duplication of a manganese/cadmium transporter gene reduces cadmium accumulation in rice grain.
Nature food, 3(8):597-607 (2022)
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Buchert, F., Scholz, M., Hippler, M.
Electron transfer via cytochrome b6f complex displays sensitivity to antimycin A upon STT7 kinase activation.
The Biochemical journal, 479(1):111-127 (2022)
Doi.org/10.1042/BCJ20210802
Gustafsson, A.L.S., Gussarova, G., Borgen, L., Ikeda, H., Antonelli, A., Marie-Orleach, L., Rieseberg, L.H., Brochmann, C.
Rapid evolution of post-zygotic reproductive isolation is widespread in Arctic plant lineages.
Annals of botany, 129(2):171-184 (2022)
Doi.org/10.1093/aob/mcab128
Yoshikawa, T., Hisano, H., Hibara, K., Nie, J., Tanaka, Y., Itoh, J., Taketa, S.
A bifurcated palea mutant infers functional differentiation of WOX3 genes in flower and leaf morphogenesis of barley.
AoB PLANTS, 14(3):plac019 (2022)
Doi.org/10.1093/aobpla/plac019
Sakkour, A., Mascher, M., Himmelbach, A., Haberer, G., Lux, T., Spannagl, M., Stein, N., Kawamoto, S., Sato, K.
Chromosome-scale assembly of barley cv. 'Haruna Nijo' as a resource for barley genetics.
DNA research : an international journal for rapid publication of reports on genes and genomes, 29(1):10.1093/dnares/dsac001 (2022)
Doi.org/10.1093/dnares/dsac001
Huang, S., Yamaji, N., Feng Ma, J.
Zinc transport in rice: how to balance optimal plant requirements and human nutrition.
Journal of experimental botany, 73(6):1800-1808 (2022)
Doi.org/10.1093/jxb/erab478
Rathod, M.K., Nellaepalli, S., Ozawa, S., Kuroda, H., Kodama, N., Bujaldon, S., Wollman, F., Takahashi, Y.
Assembly Apparatus of Light-Harvesting Complexes: Identification of Alb3.1-cpSRP-LHCP Complexes in the Green Alga Chlamydomonas reinhardtii.
Plant & cell physiology, 63(1):70-81 (2022)
Doi.org/10.1093/pcp/pcab146
Okegawa, Y., Tsuda, N., Sakamoto, W., Motohashi, K.
Maintaining the Chloroplast Redox Balance through the PGR5-Dependent Pathway and the Trx System Is Required for Light-Dependent Activation of Photosynthetic Reactions.
Plant & cell physiology, 63(1):92-103 (2022)
Doi.org/10.1093/pcp/pcab148
Konishi, N., Huang, S., Yamaji, N., Ma, J.F.
Cell-Type-Dependent but CME-Independent Polar Localization of Silicon Transporters in Rice.
Plant & cell physiology, 63(5):699-712 (2022)
Doi.org/10.1093/pcp/pcac032
Wahinya, F.W., Yamazaki, K., Jing, Z., Takami, T., Kamiya, T., Kajiya-Kanegae, H., Takanashi, H., Iwata, H., Tsutsumi, N., Fujiwara, T., Sakamoto, W.
Sorghum Ionomics Reveals the Functional SbHMA3a Allele that Limits Excess Cadmium Accumulation in Grains.
Plant & cell physiology, 63(5):713-728 (2022)
Doi.org/10.1093/pcp/pcac035
Imran, S., Oyama, M., Horie, R., Kobayashi, N.I., Costa, A., Kumano, R., Hirata, C., Tran, S.T.H., Katsuhara, M., Tanoi, K., Kohchi, T., Ishizaki, K., Horie, T.
Distinct Functions of the Atypical Terminal Hydrophilic Domain of the HKT Transporter in the Liverwort Marchantia polymorpha.
Plant & cell physiology, 63(6):802-816 (2022)
Doi.org/10.1093/pcp/pcac044
Takanashi, H., Kajiya-Kanegae, H., Nishimura, A., Yamada, J., Ishimori, M., Kobayashi, M., Yano, K., Iwata, H., Tsutsumi, N., Sakamoto, W.
DOMINANT AWN INHIBITOR Encodes the ALOG Protein Originating from Gene Duplication and Inhibits AWN Elongation by Suppressing Cell Proliferation and Elongation in Sorghum.
Plant & cell physiology, 63(7):901-918 (2022)
Doi.org/10.1093/pcp/pcac057
Huang, S., Konishi, N., Yamaji, N., Shao, J.F., Mitani-Ueno, N., Ma, J.F.
Boron uptake in rice is regulated post-translationally via a clathrin-independent pathway.
Plant physiology, 188(3):1649-1664 (2022)
Doi.org/10.1093/plphys/kiab575
Ho, T.T.H., Schwier, C., Elman, T., Fleuter, V., Zinzius, K., Scholz, M., Yacoby, I., Buchert, F., Hippler, M.
Photosystem I light-harvesting proteins regulate photosynthetic electron transfer and hydrogen production.
Plant physiology, 189(1):329-343 (2022)
Doi.org/10.1093/plphys/kiac055
Yamatani, H., Ito, T., Nishimura, K., Yamada, T., Sakamoto, W., Kusaba, M.
Genetic analysis of chlorophyll synthesis and degradation regulated by BALANCE of CHLOROPHYLL METABOLISM.
Plant physiology, 189(1):419-432 (2022)
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Onosato, H., Fujimoto, G., Higami, T., Sakamoto, T., Yamada, A., Suzuki, T., Ozawa, R., Matsunaga, S., Seki, M., Ueda, M., Sako, K., Galis, I., Arimura, G.
Sustained defense response via volatile signaling and its epigenetic transcriptional regulation.
Plant physiology, 189(2):922-933 (2022)
Doi.org/10.1093/plphys/kiac077
Walker, P.J., Freitas-Astua, J., Bejerman, N., Blasdell, K.R., Breyta, R., Dietzgen, R.G., Fooks, A.R., Kondo, H., Kurath, G., Kuzmin, I.V., Ramos-Gonzalez, P.L., Shi, M., Stone, D.M., Tesh, R.B., Tordo, N., Vasilakis, N., Whitfield, A.E., Ictv Report Consortium, NA.
ICTV Virus Taxonomy Profile: Rhabdoviridae 2022.
The Journal of general virology, 103(6):10.1099/jgv.0.001689 (2022)
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Jiang, D., Ayllon, M.A., Marzano, S.L., Kondo, H., Turina, M., Ictv Report Consortium, NA.
ICTV Virus Taxonomy Profile: Mymonaviridae 2022.
The Journal of general virology, 103(11):10.1099/jgv.0.001787 (2022)
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Wari, D., Aboshi, T., Shinya, T., Galis, I.
Integrated view of plant metabolic defense with particular focus on chewing herbivores.
Journal of integrative plant biology, 64(2):449-475 (2022)
Doi.org/10.1111/jipb.13204
Niu, E., Ye, C., Zhao, W., Kondo, H., Wu, Y., Chen, J., Andika, I.B., Sun, L.
Coat protein of Chinese wheat mosaic virus upregulates and interacts with cytosolic glyceraldehyde-3-phosphate dehydrogenase, a negative regulator of plant autophagy, to promote virus infection.
Journal of integrative plant biology, 64(8):1631-1645 (2022)
Doi.org/10.1111/jipb.13313
Shiono, K., Yoshikawa, M., Kreszies, T., Yamada, S., Hojo, Y., Matsuura, T., Mori, I.C., Schreiber, L., Yoshioka, T.
Abscisic acid is required for exodermal suberization to form a barrier to radial oxygen loss in the adventitious roots of rice (Oryza sativa).
The New phytologist, 233(2):655-669 (2022)
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Huang, S., Ma, J.F.
Role of calcium signaling in aluminum tolerance in Arabidopsis.
The New phytologist, 233(6):2327-2329 (2022)
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Huang, S., Yamaji, N., Sakurai, G., Mitani-Ueno, N., Konishi, N., Ma, J.F.
A pericycle-localized silicon transporter for efficient xylem loading in rice.
The New phytologist, 234(1):197-208 (2022)
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Gu, M., Huang, H., Hisano, H., Ding, G., Huang, S., Mitani-Ueno, N., Yokosho, K., Sato, K., Yamaji, N., Ma, J.F.
A crucial role for a node-localized transporter, HvSPDT, in loading phosphorus into barley grains.
The New phytologist, 234(4):1249-1261 (2022)
Doi.org/10.1111/nph.18057
Inoue, S., Hayashi, M., Huang, S., Yokosho, K., Gotoh, E., Ikematsu, S., Okumura, M., Suzuki, T., Kamura, T., Kinoshita, T., Ma, J.F.
A tonoplast-localized magnesium transporter is crucial for stomatal opening in Arabidopsis under high Mg(2+) conditions.
The New phytologist, 236(3):864-877 (2022)
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Hisano, H., Hoffie, R.E., Abe, F., Munemori, H., Matsuura, T., Endo, M., Mikami, M., Nakamura, S., Kumlehn, J., Sato, K.
Regulation of germination by targeted mutagenesis of grain dormancy genes in barley.
Plant biotechnology journal, 20(1):37-46 (2022)
Doi.org/10.1111/pbi.13692
Wang, Q., Li, Y., Kosami, K., Liu, C., Li, J., Zhang, D., Miki, D., Kawano, Y.
Three highly conserved hydrophobic residues in the predicted alpha2-helix of rice NLR protein Pit contribute to its localization and immune induction.
Plant, cell & environment, 45(6):1876-1890 (2022)
Doi.org/10.1111/pce.14315
Sasaki, T., Ariyoshi, M., Yamamoto, Y., Mori, I.C.
Functional roles of ALMT-type anion channels in malate-induced stomatal closure in tomato and Arabidopsis.
Plant, cell & environment, 45(8):2337-2350 (2022)
Doi.org/10.1111/pce.14373
Okada, S., Lei, G.J., Yamaji, N., Huang, S., Ma, J.F., Mochida, K., Hirayama, T.
FE UPTAKE-INDUCING PEPTIDE1 maintains Fe translocation by controlling Fe deficiency response genes in the vascular tissue of Arabidopsis.
Plant, cell & environment, 45(11):3322-3337 (2022)
Doi.org/10.1111/pce.14424
Li, L., Zhu, Z., Liao, Y., Yang, C., Fan, N., Zhang, J., Yamaji, N., Dirick, L., Ma, J.F., Curie, C., Huang, C.
NRAMP6 and NRAMP1 cooperatively regulate root growth and manganese translocation under manganese deficiency in Arabidopsis.
The Plant journal : for cell and molecular biology, 110(6):1564-1577 (2022)
Doi.org/10.1111/tpj.15754
Cho, L., Yoon, J., Tun, W., Baek, G., Peng, X., Hong, W., Mori, I.C., Hojo, Y., Matsuura, T., Kim, S., Kim, S., Kwon, S., Jung, K., Jeon, J., An, G.
Cytokinin increases vegetative growth period by suppressing florigen expression in rice and maize.
The Plant journal : for cell and molecular biology, 110(6):1619-1635 (2022)
Doi.org/10.1111/tpj.15760
Wang, P., Yamaji, N., Ma, J.F.
A Golgi-localized glycosyltransferase, OsGT14;1, is required for growth of both roots and shoots in rice.
The Plant journal : for cell and molecular biology, 111(4):923-935 (2022)
Doi.org/10.1111/tpj.15897
Wang, Z., Orosa-Puente, B., Nomoto, M., Grey, H., Potuschak, T., Matsuura, T., Mori, I.C., Tada, Y., Genschik, P., Spoel, S.H.
Proteasome-associated ubiquitin ligase relays target plant hormone-specific transcriptional activators.
Science advances, 8(42):eabn4466 (2022)
Doi.org/10.1126/sciadv.abn4466
Sato, Y., Hisano, S., Lopez-Herrera, C.J., Kondo, H., Suzuki, N.
Three-Layered Complex Interactions among Capsidless (+)ssRNA Yadokariviruses, dsRNA Viruses, and a Fungus.
mBio, 13(5):e0168522 (2022)
Doi.org/10.1128/mbio.01685-22
Hori, K., Okunishi, T., Nakamura, K., Iijima, K., Hagimoto, M., Hayakawa, K., Shu, K., Ikka, T., Yamashita, H., Yamasaki, M., Takeuchi, Y., Koyama, S., Tsujii, Y., Kayano, T., Ishii, T., Kumamaru, T., Kawagoe, Y., Yamamoto, T.
Genetic Background Negates Improvements in Rice Flour Characteristics and Food Processing Properties Caused by a Mutant Allele of the PDIL1-1 Seed Storage Protein Gene.
Rice (New York, N.Y.), 15(1):13 (2022)
Doi.org/10.1186/s12284-022-00560-w
Okada, K., Tanaka, T., Fukuoka, S., Oono, Y., Mishina, K., Oikawa, T., Sato, K., Kato, T., Komatsuda, T., Namai, K.
Two dominant genes in barley (Hordeum vulgare L.) complementarily encode perfect resistance to Japanese soil-borne wheat mosaic virus.
Breeding science, 72(5):372-382 (2022)
Doi.org/10.1270/jsbbs.22046
Moron-Lopez, J., Vergara, K., Sato, M., Gajardo, G., Ueki, S.
Intraspecies variation of the mitochondrial genome: An evaluation for phylogenetic approaches based on the conventional choices of genes and segments on mitogenome.
PloS one, 17(8):e0273330 (2022)
Doi.org/10.1371/journal.pone.0273330
Khan, H.A., Telengech, P., Kondo, H., Bhatti, M.F., Suzuki, N.
Mycovirus Hunting Revealed the Presence of Diverse Viruses in a Single Isolate of the Phytopathogenic Fungus Diplodia seriata From Pakistan.
Frontiers in cellular and infection microbiology, 12:913619 (2022)
Doi.org/10.3389/fcimb.2022.913619
Juma, P.O., Fujitani, Y., Alessa, O., Oyama, T., Yurimoto, H., Sakai, Y., Tani, A.
Siderophore for Lanthanide and Iron Uptake for Methylotrophy and Plant Growth Promotion in Methylobacterium aquaticum Strain 22A.
Frontiers in microbiology, 13:921635 (2022)
Doi.org/10.3389/fmicb.2022.921635
Fujitani, Y., Shibata, T., Tani, A.
A Periplasmic Lanthanide Mediator, Lanmodulin, in Methylobacterium aquaticum Strain 22A.
Frontiers in microbiology, 13:921636 (2022)
Doi.org/10.3389/fmicb.2022.921636
Nozawa, K., Masuda, S., Saze, H., Ikeda, Y., Suzuki, T., Takagi, H., Tanaka, K., Ohama, N., Niu, X., Kato, A., Ito, H.
Epigenetic regulation of ecotype-specific expression of the heat-activated transposon ONSEN.
Frontiers in plant science, 13:899105 (2022)
Doi.org/10.3389/fpls.2022.899105
Koyama, H., Huang, C., Pineros, M.A., Yamamoto, Y.
Editorial: Al-Induced and -Activated Signals in Aluminium Resistance.
Frontiers in plant science, 13:925541 (2022)
Doi.org/10.3389/fpls.2022.925541
Ramos-Gonzalez, P.L., Kondo, H., Morozov, S., Vasilakis, N., Varsani, A., Cao, M., Freitas-Astua, J.
Editorial: The Border Between Kitavirids and Nege-Like Viruses: Tracking the Evolutionary Pace of Plant- and Arthropod-Infecting Viruses.
Frontiers in plant science, 13:932523 (2022)
Doi.org/10.3389/fpls.2022.932523
Kondo, Y., Rikiishi, K., Sugimoto, M.
Rice Nudix Hydrolase OsNUDX2 Sanitizes Oxidized Nucleotides.
Antioxidants (Basel, Switzerland), 11(9):10.3390/antiox11091805 (2022)
Doi.org/10.3390/antiox11091805
Pang, T., Peng, J., Bian, R., Liu, Y., Zhang, D., Andika, I.B., Sun, L.
Similar Characteristics of siRNAs of Plant Viruses Which Replicate in Plant and Fungal Hosts.
Biology, 11(11):10.3390/biology11111672 (2022)
Doi.org/10.3390/biology11111672
Tian, M., Wei, S., Bian, R., Luo, J., Khan, H.A., Tai, H., Kondo, H., Hadidi, A., Andika, I.B., Sun, L.
Natural Cross-Kingdom Spread of Apple Scar Skin Viroid from Apple Trees to Fungi.
Cells, 11(22):10.3390/cells11223686 (2022)
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Liu, Y., Wang, R., Zhao, L., Huo, S., Liu, S., Zhang, H., Tani, A., Lv, H.
The Antifungal Activity of Cinnamon-Litsea Combined Essential Oil against Dominant Fungal Strains of Moldy Peanut Kernels.
Foods (Basel, Switzerland), 11(11):10.3390/foods11111586 (2022)
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Arata, M., Usami, F.M., Fujimori, T.
Coordination of Cilia Movements in Multi-Ciliated Cells.
Journal of developmental biology, 10(4):10.3390/jdb10040047 (2022)
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Kim, J., Mochida, K., Shinozaki, K.
ER Stress and the Unfolded Protein Response: Homeostatic Regulation Coordinate Plant Survival and Growth.
Plants (Basel, Switzerland), 11(23):10.3390/plants11233197 (2022)
Doi.org/10.3390/plants11233197
Das, S., Hisano, S., Eusebio-Cope, A., Kondo, H., Suzuki, N.
A Transfectable Fusagravirus from a Japanese Strain of Cryphonectria carpinicola with Spherical Particles.
Viruses, 14(8):10.3390/v14081722 (2022)
Doi.org/10.3390/v14081722
Cao, X., Liu, J., Pang, J., Kondo, H., Chi, S., Zhang, J., Sun, L., Andika, I.B.
Common but Nonpersistent Acquisitions of Plant Viruses by Plant-Associated Fungi.
Viruses, 14(10):10.3390/v14102279 (2022)
Doi.org/10.3390/v14102279
Ida, T., Crofts, N., Miura, S., Matsushima, R., Fujita, N.
Starch Biosynthetic Protein Complex Formation in Rice ss2a be2b (+) Double Mutant Differs from Their Parental Single Mutants.
Journal of applied glycoscience, 69(2):23-33 (2022)
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2021
Hoffie, R.E., Otto, I., Hisano, H., Kumlehn, J.
Site-Directed Mutagenesis in Barley Using RNA-Guided Cas Endonucleases During Microspore-Derived Generation of Doubled Haploids.
Methods in molecular biology (Clifton, N.J.), 2287:199-214 (2021)
Doi.org/10.1007/978-1-0716-1315-3_9
Ogasawara, M., Miyazaki, N., Monden, G., Taniko, K., Lim, S., Iwata, M., Ishii, T., Ma, J.F., Ishikawa, R.
Role of qGZn9a in controlling grain zinc concentration in rice, Oryza sativa L.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 134(9):3013-3022 (2021)
Doi.org/10.1007/s00122-021-03873-4
Walker, P.J., Siddell, S.G., Lefkowitz, E.J., Mushegian, A.R., Adriaenssens, E.M., Alfenas-Zerbini, P., Davison, A.J., Dempsey, D.M., Dutilh, B.E., Garcia, M.L., Harrach, B., Harrison, R.L., Hendrickson, R.C., Junglen, S., Knowles, N.J., Krupovic, M., Kuhn, J.H., Lambert, A.J., Lobocka, M., Nibert, M.L., Oksanen, H.M., Orton, R.J., Robertson, D.L., Rubino, L., Sabanadzovic, S., Simmonds, P., Smith, D.B., Suzuki, N., Van Dooerslaer, K., Vandamme, A., Varsani, A., Zerbini, F.M.
Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021).
Archives of virology, 166(9):2633-2648 (2021)
Doi.org/10.1007/s00705-021-05156-1
Khan, H.A., Sato, Y., Kondo, H., Jamal, A., Bhatti, M.F., Suzuki, N.
A second capsidless hadakavirus strain with 10 positive-sense single-stranded RNA genomic segments from Fusarium nygamai.
Archives of virology, 166(10):2711-2722 (2021)
Doi.org/10.1007/s00705-021-05176-x
Tazawa, M., Katsuhara, M., Wayne, R.
Age dependence of the hydraulic resistances of the plasma membrane and the tonoplast (vacuolar membrane) in cells of Chara corallina.
Protoplasma, 258(4):793-801 (2021)
Doi.org/10.1007/s00709-020-01596-9
Sato, K., Yoshida, K., Takumi, S.
RNA-Seq-based DNA marker analysis of the genetics and molecular evolution of Triticeae species.
Functional & integrative genomics, 21(5-6):535-542 (2021)
Doi.org/10.1007/s10142-021-00799-4
Mori, I.C., Arias-Barreiro, C.R., Ooi, L., Lee, N., Sobahan, M.A., Nakamura, Y., Hirai, Y., Murata, Y.
Cadmium uptake via apoplastic bypass flow in Oryza sativa.
Journal of plant research, 134(5):1139-1148 (2021)
Doi.org/10.1007/s10265-021-01319-y
Sata, H., Shimizu, M., Iwasaki, T., Ikeda, H., Soejima, A., Kozhevnikov, A.E., Kozhevnikova, Z.V., Im, H., Jang, S., Azuma, T., Nagano, A.J., Fujii, N.
Phylogeography of the East Asian grassland plant, Viola orientalis (Violaceae), inferred from plastid and nuclear restriction site-associated DNA sequencing data.
Journal of plant research, 134(6):1181-1198 (2021)
Doi.org/10.1007/s10265-021-01339-8
Nagaki, K., Furuta, T., Yamaji, N., Kuniyoshi, D., Ishihara, M., Kishima, Y., Murata, M., Hoshino, A., Takatsuka, H.
Effectiveness of Create ML in microscopy image classifications: a simple and inexpensive deep learning pipeline for non-data scientists.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 29(3-4):361-371 (2021)
Doi.org/10.1007/s10577-021-09676-z
Nishioka, K., Kato, Y., Ozawa, S., Takahashi, Y., Sakamoto, W.
Phos-tag-based approach to study protein phosphorylation in the thylakoid membrane.
Photosynthesis research, 147(1):107-124 (2021)
Doi.org/10.1007/s11120-020-00803-1
Fujiyoshi, S., Yarimizu, K., Miyashita, Y., Rilling, J., Acuna, J.J., Ueki, S., Gajardo, G., Espinoza-Gonzalez, O., Guzman, L., Jorquera, M.A., Nagai, S., Maruyama, F.
Suitcase Lab: new, portable, and deployable equipment for rapid detection of specific harmful algae in Chilean coastal waters.
Environmental science and pollution research international, 28(11):14144-14155 (2021)
Doi.org/10.1007/s11356-020-11567-5
Tani, A., Mitsui, R., Nakagawa, T.
Discovery of lanthanide-dependent methylotrophy and screening methods for lanthanide-dependent methylotrophs.
Methods in enzymology, 650:1-18 (2021)
Doi.org/10.1016/bs.mie.2021.01.031
Gupta, T.K., Klumpe, S., Gries, K., Heinz, S., Wietrzynski, W., Ohnishi, N., Niemeyer, J., Spaniol, B., Schaffer, M., Rast, A., Ostermeier, M., Strauss, M., Plitzko, J.M., Baumeister, W., Rudack, T., Sakamoto, W., Nickelsen, J., Schuller, J.M., Schroda, M., Engel, B.D.
Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity.
Cell, 184(14):3643-3659.e23 (2021)
Doi.org/10.1016/j.cell.2021.05.011
Wiggenhauser, M., Aucour, A., Bureau, S., Campillo, S., Telouk, P., Romani, M., Ma, J.F., Landrot, G., Sarret, G.
Cadmium transfer in contaminated soil-rice systems: Insights from solid-state speciation analysis and stable isotope fractionation.
Environmental pollution (Barking, Essex : 1987), 269:115934 (2021)
Doi.org/10.1016/j.envpol.2020.115934
Tabara, M., Koiwa, H., Suzuki, N., Fukuhara, T.
Biochemical characterization of the dicing activity of Dicer-like 2 in the model filamentous fungus Neurospora crassa.
Fungal genetics and biology : FG & B, 146:103488 (2021)
Doi.org/10.1016/j.fgb.2020.103488
Arjona-Lopez, J.M., Telengech, P., Suzuki, N., Lopez-Herrera, C.J.
A moderate level of hypovirulence conferred by a hypovirus in the avocado white root rot fungus, Rosellinia necatrix.
Fungal biology, 125(1):69-76 (2021)
Doi.org/10.1016/j.funbio.2020.10.007
Kawano, Y.
Fine-tuning ROS homeostasis by ROD1 is a battleground between rice and Magnaporthe oryzae.
Molecular plant, 14(12):1979-1981 (2021)
Doi.org/10.1016/j.molp.2021.11.005
Ube, N., Katsuyama, Y., Kariya, K., Tebayashi, S., Sue, M., Tohnooka, T., Ueno, K., Taketa, S., Ishihara, A.
Identification of methoxylchalcones produced in response to CuCl(2) treatment and pathogen infection in barley.
Phytochemistry, 184:112650 (2021)
Doi.org/10.1016/j.phytochem.2020.112650
Shahi, S., Chiba, S., Kondo, H., Suzuki, N.
Cryphonectria nitschkei chrysovirus 1 with unique molecular features and a very narrow host range.
Virology, 554:55-65 (2021)
Doi.org/10.1016/j.virol.2020.11.011
Richardson, K.H., Wright, J.J., Simenas, M., Thiemann, J., Esteves, A.M., McGuire, G., Myers, W.K., Morton, J.J.L., Hippler, M., Nowaczyk, M.M., Hanke, G.T., Roessler, M.M.
Functional basis of electron transport within photosynthetic complex I.
Nature communications, 12(1):5387 (2021)
Doi.org/10.1038/s41467-021-25527-1
Saitoh, Y., Mitani-Ueno, N., Saito, K., Matsuki, K., Huang, S., Yang, L., Yamaji, N., Ishikita, H., Shen, J., Ma, J.F., Suga, M.
Structural basis for high selectivity of a rice silicon channel Lsi1.
Nature communications, 12(1):6236 (2021)
Doi.org/10.1038/s41467-021-26535-x
Ogawa, D., Suzuki, Y., Yokoo, T., Katoh, E., Teruya, M., Muramatsu, M., Ma, J.F., Yoshida, Y., Isaji, S., Ogo, Y., Miyao, M., Kim, J., Kojima, M., Takebayashi, Y., Sakakibara, H., Takeda, S., Okada, K., Mori, N., Seki, M., Habu, Y.
Acetic-acid-induced jasmonate signaling in root enhances drought avoidance in rice.
Scientific reports, 11(1):6280 (2021)
Doi.org/10.1038/s41598-021-85355-7
Takanashi, H., Shichijo, M., Sakamoto, L., Kajiya-Kanegae, H., Iwata, H., Sakamoto, W., Tsutsumi, N.
Genetic dissection of QTLs associated with spikelet-related traits and grain size in sorghum.
Scientific reports, 11(1):9398 (2021)
Doi.org/10.1038/s41598-021-88917-x
Jing, Z., Wacera W, F., Takami, T., Takanashi, H., Fukada, F., Kawano, Y., Kajiya-Kanegae, H., Iwata, H., Tsutsumi, N., Sakamoto, W.
NB-LRR-encoding genes conferring susceptibility to organophosphate pesticides in sorghum.
Scientific reports, 11(1):19828 (2021)
Doi.org/10.1038/s41598-021-98908-7
Okamura, E., Ohtaka, K., Nishihama, R., Uchida, K., Kuwahara, A., Mochida, K., Hirai, M.Y.
Diversified amino acid-mediated allosteric regulation of phosphoglycerate dehydrogenase for serine biosynthesis in land plants.
The Biochemical journal, 478(12):2217-2232 (2021)
Doi.org/10.1042/BCJ20210191
Caspy, I., Fadeeva, M., Kuhlgert, S., Borovikova-Sheinker, A., Klaiman, D., Masrati, G., Drepper, F., Ben-Tal, N., Hippler, M., Nelson, N.
Structure of plant photosystem I-plastocyanin complex reveals strong hydrophobic interactions.
The Biochemical journal, 478(12):2371-2384 (2021)
Doi.org/10.1042/BCJ20210267
Schulze, S., Oltmanns, A., Fufezan, C., Kragenbring, J., Mormann, M., Pohlschroder, M., Hippler, M.
SugarPy facilitates the universal, discovery-driven analysis of intact glycopeptides.
Bioinformatics (Oxford, England), 36(22-23):5330-5336 (2021)
Doi.org/10.1093/bioinformatics/btaa1042
Sato, K., Abe, F., Mascher, M., Haberer, G., Gundlach, H., Spannagl, M., Shirasawa, K., Isobe, S.
Chromosome-scale genome assembly of the transformation-amenable common wheat cultivar 'Fielder'.
DNA research : an international journal for rapid publication of reports on genes and genomes, 28(3):10.1093/dnares/dsab008 (2021)
Doi.org/10.1093/dnares/dsab008
Sato, K., Mascher, M., Himmelbach, A., Haberer, G., Spannagl, M., Stein, N.
Chromosome-scale assembly of wild barley accession "OUH602".
G3 (Bethesda, Md.), 11(10):10.1093/g3journal/jkab244 (2021)
Doi.org/10.1093/g3journal/jkab244
Yu, E., Yamaji, N., Mochida, K., Galis, I., Asaka, K., Ma, J.F.
LYSINE KETOGLUTARATE REDUCTASE TRANS-SPLICING RELATED 1 is involved in temperature-dependent root growth in rice.
Journal of experimental botany, 72(18):6336-6349 (2021)
Doi.org/10.1093/jxb/erab240
Yu, E., Yamaji, N., Mao, C., Wang, H., Ma, J.F.
Lateral roots but not root hairs contribute to high uptake of manganese and cadmium in rice.
Journal of experimental botany, 72(20):7219-7228 (2021)
Doi.org/10.1093/jxb/erab329
Shibasaka, M., Horie, T., Katsuhara, M.
Mechanisms Activating Latent Functions of PIP Aquaporin Water Channels via the Interaction between PIP1 and PIP2 Proteins.
Plant & cell physiology, 62(1):92-99 (2021)
Doi.org/10.1093/pcp/pcaa142
Yokosho, K., Yamaji, N., Ma, J.F.
Buckwheat FeNramp5 Mediates High Manganese Uptake in Roots.
Plant & cell physiology, 62(4):600-609 (2021)
Doi.org/10.1093/pcp/pcaa153
Taketa, S., Hattori, M., Takami, T., Himi, E., Sakamoto, W.
Mutations in a�Golden2-Like�Gene Cause Reduced Seed Weight in�Barley�albino lemma 1�Mutants.
Plant & cell physiology, 62(3):447-457 (2021)
Doi.org/10.1093/pcp/pcab001
Sakamoto, W.
Editorial Feature: Meet the PCP Editor-In-Chief-Wataru Sakamoto.
Plant & cell physiology, 62(2):222-223 (2021)
Doi.org/10.1093/pcp/pcab003
Ma, J.F., Tsay, Y.
Transport Systems of Mineral Elements in Plants: Transporters, Regulation and Utilization.
Plant & cell physiology, 62(4):539-540 (2021)
Doi.org/10.1093/pcp/pcab026
Tsuchiya, Y., Nakamura, T., Izumi, Y., Okazaki, K., Shinano, T., Kubo, Y., Katsuhara, M., Sasaki, T., Yamamoto, Y.
Physiological Role of Aerobic Fermentation Constitutively Expressed in an Aluminum-Tolerant Cell Line of Tobacco (Nicotiana tabacum).
Plant & cell physiology, 62(9):1460-1477 (2021)
Doi.org/10.1093/pcp/pcab098
Akamatsu, A., Fujiwara, M., Hamada, S., Wakabayashi, M., Yao, A., Wang, Q., Kosami, K., Dang, T.T., Kaneko-Kawano, T., Fukada, F., Shimamoto, K., Kawano, Y.
The Small GTPase OsRac1 Forms Two Distinct Immune Receptor Complexes Containing the PRR OsCERK1 and the NLR Pit.
Plant & cell physiology, 62(11):1662-1675 (2021)
Doi.org/10.1093/pcp/pcab121
Hirosawa, Y., Tada, A., Matsuura, T., Mori, I.C., Ogura, Y., Hayashi, T., Uehara, S., Ito-Inaba, Y., Inaba, T.
Salicylic Acid Acts Antagonistically to Plastid Retrograde Signaling by Promoting the Accumulation of Photosynthesis-associated Proteins in Arabidopsis.
Plant & cell physiology, 62(11):1728-1744 (2021)
Doi.org/10.1093/pcp/pcab128
Tsuchiya, Y., Nakamura, T., Izumi, Y., Okazaki, K., Shinano, T., Kubo, Y., Katsuhara, M., Sasaki, T., Yamamoto, Y.
Erratum To: Physiological Role of Aerobic Fermentation Constitutively Expressed in an Aluminum-Tolerant Cell Line of Tobacco (Nicotiana Tabacum).
Plant & cell physiology, 62(6):1058 (2021)
Doi.org/10.1093/pcp/pcab131
Hippler, M., Minagawa, J., Takahashi, Y.
Photosynthesis and Chloroplast Regulation-Balancing Photosynthesis and Photoprotection under Changing Environments.
Plant & cell physiology, 62(7):1059-1062 (2021)
Doi.org/10.1093/pcp/pcab139
Khan, H.A., Shamsi, W., Jamal, A., Javaied, M., Sadiq, M., Fatma, T., Ahmed, A., Arshad, M., Waseem, M., Babar, S., Dogar, M.M., Virk, N., Janjua, H.A., Kondo, H., Suzuki, N., Bhatti, M.F.
Assessment of mycoviral diversity in Pakistani fungal isolates revealed infection by 11 novel viruses of a single strain of Fusarium mangiferae isolate SP1.
The Journal of general virology, 102(12):10.1099/jgv.0.001690 (2021)
Doi.org/10.1099/jgv.0.001690
Yurimoto, H., Iguchi, H., Di Thien, D.T., Tani, A., Okumoto, Y., Ota, A., Yamauchi, T., Akashi, T., Sakai, Y.
Methanol bioeconomy: promotion of rice crop yield in paddy fields with microbial cells prepared from natural gas-derived C(1) compound.
Microbial biotechnology, 14(4):1385-1396 (2021)
Doi.org/10.1111/1751-7915.13725
Lei, G.J., Yamaji, N., Ma, J.F.
Two metallothionein genes highly expressed in rice nodes are involved in distribution of Zn to the grain.
The New phytologist, 229(2):1007-1020 (2021)
Doi.org/10.1111/nph.16860
Shao, J.F., Yamaji, N., Huang, S., Ma, J.F.
Fine regulation system for distribution of boron to different tissues in rice.
The New phytologist, 230(2):656-668 (2021)
Doi.org/10.1111/nph.17169
Che, J., Yamaji, N., Ma, J.F.
Role of a vacuolar iron transporter OsVIT2 in the distribution of iron to rice grains.
The New phytologist, 230(3):1049-1062 (2021)
Doi.org/10.1111/nph.17219
Ikeda, H., Suzuki, T., Oka, Y., Gustafsson, A.L.S., Brochmann, C., Mochizuki, N., Nagatani, A.
Divergence in red light responses associated with thermal reversion of phytochrome B between high- and low-latitude species.
The New phytologist, 231(1):75-84 (2021)
Doi.org/10.1111/nph.17381
Fukada, F., Rossel, N., Munch, K., Glatter, T., Kahmann, R.
A small Ustilago maydis effector acts as a novel adhesin for hyphal aggregation in plant tumors.
The New phytologist, 231(1):416-431 (2021)
Doi.org/10.1111/nph.17389
Yamasaki, Y., Sumioka, H., Takiguchi, M., Uemura, T., Kihara, Y., Shinya, T., Galis, I., Arimura, G.
Phytohormone-dependent plant defense signaling orchestrated by oral bacteria of the herbivore Spodoptera litura.
The New phytologist, 231(5):2029-2038 (2021)
Doi.org/10.1111/nph.17444
Konishi, N., Ma, J.F.
Three polarly localized ammonium transporter 1 members are cooperatively responsible for ammonium uptake in rice under low ammonium condition.
The New phytologist, 232(4):1778-1792 (2021)
Doi.org/10.1111/nph.17679
Aboshi, T., Iitsuka, C., Galis, I., Teraishi, M., Kamo, M., Nishimura, A., Ishihara, A., Mori, N., Murayama, T.
Isopentylamine is a novel defence compound induced by insect feeding in rice.
Plant, cell & environment, 44(1):247-256 (2021)
Doi.org/10.1111/pce.13902
Nasr Esfahani, M., Inoue, K., Nguyen, K.H., Chu, H.D., Watanabe, Y., Kanatani, A., Burritt, D.J., Mochida, K., Tran, L.P.
Phosphate or nitrate imbalance induces stronger molecular responses than combined nutrient deprivation in roots and leaves of chickpea plants.
Plant, cell & environment, 44(2):574-597 (2021)
Doi.org/10.1111/pce.13935
Mujiono, K., Tohi, T., Sobhy, I.S., Hojo, Y., Shinya, T., Galis, I.
Herbivore-induced and constitutive volatiles are controlled by different oxylipin-dependent mechanisms in rice.
Plant, cell & environment, 44(8):2687-2699 (2021)
Doi.org/10.1111/pce.14126
Mu, S., Yamaji, N., Sasaki, A., Luo, L., Du, B., Che, J., Shi, H., Zhao, H., Huang, S., Deng, F., Shen, Z., Guerinot, M.L., Zheng, L., Ma, J.F.
A transporter for delivering zinc to the developing tiller bud and panicle in rice.
The Plant journal : for cell and molecular biology, 105(3):786-799 (2021)
Doi.org/10.1111/tpj.15073
Das, S., Alam, M.M., Zhang, R., Hisano, S., Suzuki, N.
Proof of Concept of the Yadokari Nature: a Capsidless Replicase-Encoding but Replication-Dependent Positive-Sense Single-Stranded RNA Virus Hosted by an Unrelated Double-Stranded RNA Virus.
Journal of virology, 95(17):e0046721 (2021)
Doi.org/10.1128/JVI.00467-21
Suzuki, N., Cornejo, C., Aulia, A., Shahi, S., Hillman, B.I., Rigling, D.
In-Tree Behavior of Diverse Viruses Harbored in the Chestnut Blight Fungus, Cryphonectria parasitica.
Journal of virology, 95(6):10.1128/JVI.01962-20 (2021)
Doi.org/10.1128/JVI.01962-20
Loudya, N., Mishra, P., Takahagi, K., Uehara-Yamaguchi, Y., Inoue, K., Bogre, L., Mochida, K., Lopez-Juez, E.
Cellular and transcriptomic analyses reveal two-staged chloroplast biogenesis underpinning photosynthesis build-up in the wheat leaf.
Genome biology, 22(1):151 (2021)
Doi.org/10.1186/s13059-021-02366-3
Rikiishi, K., Sugimoto, M., Maekawa, M.
Transcriptomic analysis of developing seeds in a wheat (Triticum aestivum L.) mutant RSD32 with reduced seed dormancy.
Breeding science, 71(2):155-166 (2021)
Doi.org/10.1270/jsbbs.20016
Hisano, H., Abe, F., Hoffie, R.E., Kumlehn, J.
Targeted genome modifications in cereal crops.
Breeding science, 71(4):405-416 (2021)
Doi.org/10.1270/jsbbs.21019
Hibara, K., Miya, M., Benvenuto, S.A., Hibara-Matsuo, N., Mimura, M., Yoshikawa, T., Suzuki, M., Kusaba, M., Taketa, S., Itoh, J.
Regulation of the plastochron by three many-noded dwarf genes in barley.
PLoS genetics, 17(5):e1009292 (2021)
Doi.org/10.1371/journal.pgen.1009292
Yaeno, T., Wahara, M., Nagano, M., Wanezaki, H., Toda, H., Inoue, H., Eishima, A., Nishiguchi, M., Hisano, H., Kobayashi, K., Sato, K., Yamaoka, N.
RACE1, a Japanese Blumeria graminis f. sp. hordei isolate, is capable of overcoming partially mlo-mediated penetration resistance in barley in an allele-specific manner.
PloS one, 16(8):e0256574 (2021)
Doi.org/10.1371/journal.pone.0256574
Kondo, H., Yoshida, N., Fujita, M., Maruyama, K., Hyodo, K., Hisano, H., Tamada, T., Andika, I.B., Suzuki, N.
Identification of a Novel Quinvirus in the Family Betaflexiviridae That Infects Winter Wheat.
Frontiers in microbiology, 12:715545 (2021)
Doi.org/10.3389/fmicb.2021.715545
Alessa, O., Ogura, Y., Fujitani, Y., Takami, H., Hayashi, T., Sahin, N., Tani, A.
Comprehensive Comparative Genomics and Phenotyping of Methylobacterium Species.
Frontiers in microbiology, 12:740610 (2021)
Doi.org/10.3389/fmicb.2021.740610
Li, X.L., Zhao, X.Q., Dong, X.Y., Ma, J.F., Shen, R.F.
Secretion of Gluconic Acid From Nguyenibacter sp. L1 Is Responsible for Solubilization of Aluminum Phosphate.
Frontiers in microbiology, 12:784025 (2021)
Doi.org/10.3389/fmicb.2021.784025
Liu, Y., Luo, W., Linghu, Q., Abe, F., Hisano, H., Sato, K., Kamiya, Y., Kawaura, K., Onishi, K., Endo, M., Toki, S., Hamada, H., Nagira, Y., Taoka, N., Imai, R.
In planta Genome Editing in Commercial Wheat Varieties.
Frontiers in plant science, 12:648841 (2021)
Doi.org/10.3389/fpls.2021.648841
Inagaki, H., Miyamoto, K., Ando, N., Murakami, K., Sugisawa, K., Morita, S., Yumoto, E., Teruya, M., Uchida, K., Kato, N., Kaji, T., Takaoka, Y., Hojo, Y., Shinya, T., Galis, I., Nozawa, A., Sawasaki, T., Nojiri, H., Ueda, M., Okada, K.
Deciphering OPDA Signaling Components in the Momilactone-Producing Moss Calohypnum plumiforme.
Frontiers in plant science, 12:688565 (2021)
Doi.org/10.3389/fpls.2021.688565
Aulia, A., Hyodo, K., Hisano, S., Kondo, H., Hillman, B.I., Suzuki, N.
Identification of an RNA Silencing Suppressor Encoded by a Symptomless Fungal Hypovirus, Cryphonectria Hypovirus 4.
Biology, 10(2):10.3390/biology10020100 (2021)
Doi.org/10.3390/biology10020100
Hori, K., Saisho, D., Nagata, K., Nonoue, Y., Uehara-Yamaguchi, Y., Kanatani, A., Shu, K., Hirayama, T., Yonemaru, J., Fukuoka, S., Mochida, K.
Genetic Elucidation for Response of Flowering Time to Ambient Temperatures in Asian Rice Cultivars.
International journal of molecular sciences, 22(3):10.3390/ijms22031024 (2021)
Doi.org/10.3390/ijms22031024
Hirayama, T.
PARN-like Proteins Regulate Gene Expression in Land Plant Mitochondria by Modulating mRNA Polyadenylation.
International journal of molecular sciences, 22(19):10.3390/ijms221910776 (2021)
Doi.org/10.3390/ijms221910776
Wari, D., Kuramitsu, K., Kavallieratos, N.G.
Sap-Sucking Pests; They Do Matter.
Insects, 12(4):10.3390/insects12040363 (2021)
Doi.org/10.3390/insects12040363
Cornejo, C., Hisano, S., Braganca, H., Suzuki, N., Rigling, D.
A New Double-Stranded RNA Mycovirus in Cryphonectria naterciae Is Able to Cross the Species Barrier and Is Deleterious to a New Host.
Journal of fungi (Basel, Switzerland), 7(10):10.3390/jof7100861 (2021)
Doi.org/10.3390/jof7100861
Zhang, J., Matsuo, T., Hamasaki, I., Sato, K.
Whole Exome-Sequencing of Pooled Genomic DNA Samples to Detect Quantitative Trait Loci in Esotropia and Exotropia of Strabismus in Japanese.
Life (Basel, Switzerland), 12(1):10.3390/life12010041 (2021)
Doi.org/10.3390/life12010041
Sun, L.M., Che, J., Ma, J.F., Shen, R.F.
Expression Level of Transcription Factor ART1 Is Responsible for Differential Aluminum Tolerance in Indica Rice.
Plants (Basel, Switzerland), 10(4):10.3390/plants10040634 (2021)
Doi.org/10.3390/plants10040634
Swetha, B., Singiri, J.R., Novoplansky, N., Grandhi, R., Srinivasan, J., Khadka, J., Galis, I., Grafi, G.
Single and Combined Salinity and Heat Stresses Impact Yield and Dead Pericarp Priming Activity.
Plants (Basel, Switzerland), 10(8):10.3390/plants10081627 (2021)
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Imran, S., Tsuchiya, Y., Tran, S.T.H., Katsuhara, M.
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Lucas, P., Mathieu-Rivet, E., Song, P.C.T., Oltmanns, A., Loutelier-Bourhis, C., Plasson, C., Afonso, C., Hippler, M., Lerouge, P., Mati-Baouche, N., Bardor, M.
Multiple xylosyltransferases heterogeneously xylosylate protein N-linked glycans in Chlamydomonas reinhardtii.
The Plant journal : for cell and molecular biology, 102(2):230-245 (2020)
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Muller-Schussele, S.J., Wang, R., Gutle, D.D., Romer, J., Rodriguez-Franco, M., Scholz, M., Buchert, F., Luth, V.M., Kopriva, S., Dormann, P., Schwarzlander, M., Reski, R., Hippler, M., Meyer, A.J.
Chloroplasts require glutathione reductase to balance reactive oxygen species and maintain efficient photosynthesis.
The Plant journal : for cell and molecular biology, 103(3):1140-1154 (2020)
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Kouzai, Y., Shimizu, M., Inoue, K., Uehara-Yamaguchi, Y., Takahagi, K., Nakayama, R., Matsuura, T., Mori, I.C., Hirayama, T., Abdelsalam, S.S.H., Noutoshi, Y., Mochida, K.
BdWRKY38 is required for the incompatible interaction of Brachypodium distachyon with the necrotrophic fungus Rhizoctonia solani.
The Plant journal : for cell and molecular biology, 104(4):995-1008 (2020)
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The Presence of the Hairy-Root-Disease-Inducing (Ri) Plasmid in Wheat Endophytic Rhizobia Explains a Pathogen Reservoir Function of Healthy Resistant Plants.
Applied and environmental microbiology, 86(17):10.1128/AEM.00671-20 (2020)
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Sato, Y., Shamsi, W., Jamal, A., Bhatti, M.F., Kondo, H., Suzuki, N.
Hadaka Virus 1: a Capsidless Eleven-Segmented Positive-Sense Single-Stranded RNA Virus from a Phytopathogenic Fungus, Fusarium oxysporum.
mBio, 11(3):10.1128/mBio.00450-20 (2020)
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Diploid genome differentiation conferred by RNA sequencing-based survey of genome-wide polymorphisms throughout homoeologous loci in Triticum and Aegilops.
BMC genomics, 21(1):246 (2020)
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Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes.
Genome biology, 21(1):178 (2020)
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Ukai, Y., Inoue, K., Kamada, M., Teramura, H., Yanagisawa, S., Kitazaki, K., Shoji, K., Goto, F., Mochida, K., Yoshihara, T., Shimada, H.
De novo transcriptome analysis reveals an unperturbed transcriptome under high cadmium conditions in the Cd-hypertolerant fern Athyrium yokoscense.
Genes & genetic systems, 95(2):65-74 (2020)
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Phylogenetic analysis of the Si7PPO gene in foxtail millet, Setaria italica, provides further evidence for multiple origins of the negative phenol color reaction phenotype.
Genes & genetic systems, 95(4):191-199 (2020)
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Takumi, S., Mitta, S., Komura, S., Ikeda, T.M., Matsunaka, H., Sato, K., Yoshida, K., Murai, K.
Introgression of chromosomal segments conferring early heading date from wheat diploid progenitor, Aegilops tauschii Coss., into Japanese elite wheat cultivars.
PloS one, 15(1):e0228397 (2020)
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Okada, M., Michikawa, A., Yoshida, K., Nagaki, K., Ikeda, T.M., Takumi, S.
Phenotypic effects of the U-genome variation in nascent synthetic hexaploids derived from interspecific crosses between durum wheat and its diploid relative Aegilops umbellulata.
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Khadka, J., Raviv, B., Swetha, B., Grandhi, R., Singiri, J.R., Novoplansky, N., Gutterman, Y., Galis, I., Huang, Z., Grafi, G.
Maternal environment alters dead pericarp biochemical properties of the desert annual plant Anastatica hierochuntica L.
PloS one, 15(7):e0237045 (2020)
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Kondo, H., Fujita, M., Hisano, H., Hyodo, K., Andika, I.B., Suzuki, N.
Virome Analysis of Aphid Populations That Infest the Barley Field: The Discovery of Two Novel Groups of Nege/Kita-Like Viruses and Other Novel RNA Viruses.
Frontiers in microbiology, 11:509 (2020)
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Telengech, P., Hisano, S., Mugambi, C., Hyodo, K., Arjona-Lopez, J.M., Lopez-Herrera, C.J., Kanematsu, S., Kondo, H., Suzuki, N.
Diverse Partitiviruses From the Phytopathogenic Fungus, Rosellinia necatrix.
Frontiers in microbiology, 11:1064 (2020)
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Sato, Y., Jamal, A., Kondo, H., Suzuki, N.
Molecular Characterization of a Novel Polymycovirus From Penicillium janthinellum With a Focus on Its Genome-Associated PASrp.
Frontiers in microbiology, 11:592789 (2020)
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Wei, B., Moscou, M.J., Sato, K., Gourlie, R., Strelkov, S., Aboukhaddour, R.
Identification of a Locus Conferring Dominant Susceptibility to Pyrenophora tritici-repentis in Barley.
Frontiers in plant science, 11:158 (2020)
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Hirano, T., Kimura, S., Sakamoto, T., Okamoto, A., Nakayama, T., Matsuura, T., Ikeda, Y., Takeda, S., Suzuki, Y., Ohshima, I., Sato, M.H.
Reprogramming of the Developmental Program of Rhus javanica During Initial Stage of Gall Induction by Schlechtendalia chinensis.
Frontiers in plant science, 11:471 (2020)
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Perovic, D., Budak, H., Sato, K., Sourdille, P.
Editorial: Use of Barley and Wheat Reference Sequences: Downstream Applications in Breeding, Gene Isolation, GWAS, and Evolution.
Frontiers in plant science, 11:1017 (2020)
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Kuniyoshi, D., Masuda, I., Kanaoka, Y., Shimazaki-Kishi, Y., Okamoto, Y., Yasui, H., Yamamoto, T., Nagaki, K., Hoshino, Y., Koide, Y., Takamure, I., Kishima, Y.
Diploid Male Gametes Circumvent Hybrid Sterility Between Asian and African Rice Species.
Frontiers in plant science, 11:579305 (2020)
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Munoz-Amatriain, M., Hernandez, J., Herb, D., Baenziger, P.S., Bochard, A.M., Capettini, F., Casas, A., Cuesta-Marcos, A., Einfeldt, C., Fisk, S., Genty, A., Helgerson, L., Herz, M., Hu, G., Igartua, E., Karsai, I., Nakamura, T., Sato, K., Smith, K., Stockinger, E., Thomas, W., Hayes, P.
Perspectives on Low Temperature Tolerance and Vernalization Sensitivity in Barley: Prospects for Facultative Growth Habit.
Frontiers in plant science, 11:585927 (2020)
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Yarimizu, K., Fujiyoshi, S., Kawai, M., Norambuena-Subiabre, L., Cascales, E., Rilling, J., Vilugron, J., Cameron, H., Vergara, K., Moron-Lopez, J., Acuna, J.J., Gajardo, G., Espinoza-Gonzalez, O., Guzman, L., Jorquera, M.A., Nagai, S., Pizarro, G., Riquelme, C., Ueki, S., Maruyama, F.
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile.
International journal of environmental research and public health, 17(20):10.3390/ijerph17207642 (2020)
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Kawakami, Y., Imran, S., Katsuhara, M., Tada, Y.
Na(+) Transporter SvHKT1;1 from a Halophytic Turf Grass Is Specifically Upregulated by High Na(+) Concentration and Regulates Shoot Na(+) Concentration.
International journal of molecular sciences, 21(17):10.3390/ijms21176100 (2020)
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A Survey of Barley PIP Aquaporin Ionic Conductance Reveals Ca(2+)-Sensitive HvPIP2;8 Na(+) and K(+) Conductance.
International journal of molecular sciences, 21(19):10.3390/ijms21197135 (2020)
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Yanpirat, P., Nakatsuji, Y., Hiraga, S., Fujitani, Y., Izumi, T., Masuda, S., Mitsui, R., Nakagawa, T., Tani, A.
Lanthanide-Dependent Methanol and Formaldehyde Oxidation in Methylobacterium aquaticum Strain 22A.
Microorganisms, 8(6):10.3390/microorganisms8060822 (2020)
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Kiba, A., Fukui, K., Mitani, M., Galis, I., Hojo, Y., Shinya, T., Ohnishi, K., Hikichi, Y.
Silencing of phosphoinositide dependent protein kinase orthologs reduces hypersensitive cell death in Nicotiana benthamiana.
Plant biotechnology (Tokyo, Japan), 37(3):363-367 (2020)
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Xu, N., Oltmanns, A., Zhao, L., Girot, A., Karimi, M., Hoepfner, L., Kelterborn, S., Scholz, M., Beissel, J., Hegemann, P., Baumchen, O., Liu, L., Huang, K., Hippler, M.
Altered N-glycan composition impacts flagella-mediated adhesion in Chlamydomonas reinhardtii.
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Phylogeography of Pulsatilla cernua (Ranunculaceae), a grassland species, in Japan.
Ecology and evolution, 9(12):7262-7272 (2019)
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Transgenerational activation of an autonomous DNA transposon, Dart1-24, by 5-azaC treatment in rice.
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Genome-wide polymorphisms from RNA sequencing assembly of leaf transcripts facilitate phylogenetic analysis and molecular marker development in wild einkorn wheat.
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First report of a novel alphapartitivirus in the basidiomycete Rhizoctonia oryzae-sativae.
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Archives of virology, 164(7):1967-1980 (2019)
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Abe, F., Haque, E., Hisano, H., Tanaka, T., Kamiya, Y., Mikami, M., Kawaura, K., Endo, M., Onishi, K., Hayashi, T., Sato, K.
Genome-Edited Triple-Recessive Mutation Alters Seed Dormancy in Wheat.
Cell reports, 28(5):1362-1369.e4 (2019)
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Lu, C., Zhang, L., Tang, Z., Huang, X., Ma, J.F., Zhao, F.
Producing cadmium-free Indica rice by overexpressing OsHMA3.
Environment international, 126:619-626 (2019)
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Lanthanide-dependent methanol dehydrogenase from the legume symbiotic nitrogen-fixing bacterium Bradyrhizobium diazoefficiens strain USDA110.
Enzyme and microbial technology, 130:109371 (2019)
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Toyoshima, M., Sakata, M., Ohnishi, K., Tokumaru, Y., Kato, Y., Tokutsu, R., Sakamoto, W., Minagawa, J., Matsuda, F., Shimizu, H.
Targeted proteome analysis of microalgae under high-light conditions by optimized protein extraction of photosynthetic organisms.
Journal of bioscience and bioengineering, 127(3):394-402 (2019)
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Population Genomic Analysis and De Novo Assembly Reveal the Origin of Weedy Rice as an Evolutionary Game.
Molecular plant, 12(5):632-647 (2019)
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Ube, N., Harada, D., Katsuyama, Y., Osaki-Oka, K., Tonooka, T., Ueno, K., Taketa, S., Ishihara, A.
Identification of phenylamide phytoalexins and characterization of inducible phenylamide metabolism in wheat.
Phytochemistry, 167:112098 (2019)
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Tada, Y., Kawano, R., Komatsubara, S., Nishimura, H., Katsuhara, M., Ozaki, S., Terashima, S., Yano, K., Endo, C., Sato, M., Okamoto, M., Sawada, Y., Hirai, M.Y., Kurusu, T.
Functional screening of salt tolerance genes from a halophyte Sporobolus virginicus and transcriptomic and metabolomic analysis of salt tolerant plants expressing glycine-rich RNA-binding protein.
Plant science : an international journal of experimental plant biology, 278:54-63 (2019)
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Aulia, A., Andika, I.B., Kondo, H., Hillman, B.I., Suzuki, N.
A symptomless hypovirus, CHV4, facilitates stable infection of the chestnut blight fungus by a coinfecting reovirus likely through suppression of antiviral RNA silencing.
Virology, 533:99-107 (2019)
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Lin, Y., Fujita, M., Chiba, S., Hyodo, K., Andika, I.B., Suzuki, N., Kondo, H.
Two novel fungal negative-strand RNA viruses related to mymonaviruses and phenuiviruses in the shiitake mushroom (Lentinula edodes).
Virology, 533:125-136 (2019)
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Ohkita, S., Lee, Y., Nguyen, Q., Ikeda, K., Suzuki, N., Nakayashiki, H.
Three ourmia-like viruses and their associated RNAs in Pyricularia oryzae.
Virology, 534:25-35 (2019)
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Kondo, H., Chiba, S., Maruyama, K., Andika, I.B., Suzuki, N.
A novel insect-infecting virga/nege-like virus group and its pervasive endogenization into insect genomes.
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Molecular and biological characterization of a novel botybirnavirus identified from a Pakistani isolate of Alternaria alternata.
Virus research, 263:119-128 (2019)
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Milner, S.G., Jost, M., Taketa, S., Mazon, E.R., Himmelbach, A., Oppermann, M., Weise, S., Knupffer, H., Basterrechea, M., Konig, P., Schuler, D., Sharma, R., Pasam, R.K., Rutten, T., Guo, G., Xu, D., Zhang, J., Herren, G., Muller, T., Krattinger, S.G., Keller, B., Jiang, Y., Gonzalez, M.Y., Zhao, Y., Habekuss, A., Farber, S., Ordon, F., Lange, M., Borner, A., Graner, A., Reif, J.C., Scholz, U., Mascher, M., Stein, N.
Genebank genomics highlights the diversity of a global barley collection.
Nature genetics, 51(2):319-326 (2019)
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Yamada, K., Nitta, T., Atsuji, K., Shiroyama, M., Inoue, K., Higuchi, C., Nitta, N., Oshiro, S., Mochida, K., Iwata, O., Ohtsu, I., Suzuki, K.
Characterization of sulfur-compound metabolism underlying wax-ester fermentation in Euglena gracilis.
Scientific reports, 9(1):853 (2019)
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Andika, I.B., Kondo, H., Suzuki, N.
Dicer functions transcriptionally and posttranscriptionally in a multilayer antiviral defense.
Proceedings of the National Academy of Sciences of the United States of America, 116(6):2274-2281 (2019)
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Symptomatic plant viroid infections in phytopathogenic fungi.
Proceedings of the National Academy of Sciences of the United States of America, 116(26):13042-13050 (2019)
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Bacteria with natural chemotaxis towards methanol revealed by chemotaxis fishing technique.
Bioscience, biotechnology, and biochemistry, 83(11):2163-2171 (2019)
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Brown planthopper honeydew-associated symbiotic microbes elicit momilactones in rice.
Plant signaling & behavior, 14(11):1655335 (2019)
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Origin of wheat B-genome chromosomes inferred from RNA sequencing analysis of leaf transcripts from section Sitopsis species of Aegilops.
DNA research : an international journal for rapid publication of reports on genes and genomes, 26(2):171-182 (2019)
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Computer vision-based phenotyping for improvement of plant productivity: a machine learning perspective.
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Honeydew-associated microbes elicit defense responses against brown planthopper in rice.
Journal of experimental botany, 70(5):1683-1696 (2019)
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The tonoplast-localized transporter OsHMA3 plays an important role in maintaining Zn homeostasis in rice.
Journal of experimental botany, 70(10):2717-2725 (2019)
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The ABC transporter ABCG36 is required for cadmium tolerance in rice.
Journal of experimental botany, 70(20):5909-5918 (2019)
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Yamamoto, M., Nishimura, K., Kitashiba, H., Sakamoto, W., Nishio, T.
High temperature causes breakdown of S haplotype-dependent stigmatic self-incompatibility in self-incompatible Arabidopsis thaliana.
Journal of experimental botany, 70(20):5745-5751 (2019)
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Mashiguchi, K., Hisano, H., Takeda-Kamiya, N., Takebayashi, Y., Ariizumi, T., Gao, Y., Ezura, H., Sato, K., Zhao, Y., Hayashi, K., Kasahara, H.
Agrobacterium tumefaciens Enhances Biosynthesis of Two Distinct Auxins in the Formation of Crown Galls.
Plant & cell physiology, 60(1):29-37 (2019)
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AtALMT3 is Involved in Malate Efflux Induced by Phosphorus Deficiency in Arabidopsis thaliana Root Hairs.
Plant & cell physiology, 60(1):107-115 (2019)
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High-Affinity K+ Transporters from a Halophyte, Sporobolus virginicus, Mediate Both K+ and Na+ Transport in Transgenic Arabidopsis, X. laevis Oocytes and Yeast.
Plant & cell physiology, 60(1):176-187 (2019)
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Chiou, W., Kawamoto, T., Himi, E., Rikiishi, K., Sugimoto, M., Hayashi-Tsugane, M., Tsugane, K., Maekawa, M.
LARGE GRAIN Encodes a Putative RNA-Binding Protein that Regulates Spikelet Hull Length in Rice.
Plant & cell physiology, 60(3):503-515 (2019)
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Ohnishi, N., Wacera W, F., Sakamoto, W.
Photosynthetic Responses to High Temperature and Strong Light Suggest Potential Post-flowering Drought Tolerance of Sorghum Japanese Landrace Takakibi.
Plant & cell physiology, 60(9):2086-2099 (2019)
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Sato, Y., Miyazaki, N., Kanematsu, S., Xie, J., Ghabrial, S.A., Hillman, B.I., Suzuki, N., Ictv Report Consortium, NA.
ICTV Virus Taxonomy Profile: Megabirnaviridae.
The Journal of general virology, 100(9):1269-1270 (2019)
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Chang, M.X., Gu, M., Xia, Y.W., Dai, X.L., Dai, C.R., Zhang, J., Wang, S.C., Qu, H.Y., Yamaji, N., Feng Ma, J., Xu, G.H.
OsPHT1;3 Mediates Uptake, Translocation, and Remobilization of Phosphate under Extremely Low Phosphate Regimes.
Plant physiology, 179(2):656-670 (2019)
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Hieno, A., Naznin, H.A., Inaba-Hasegawa, K., Yokogawa, T., Hayami, N., Nomoto, M., Tada, Y., Yokogawa, T., Higuchi-Takeuchi, M., Hanada, K., Matsui, M., Ikeda, Y., Hojo, Y., Hirayama, T., Kusunoki, K., Koyama, H., Mitsuda, N., Yamamoto, Y.Y.
Transcriptome Analysis and Identification of a Transcriptional Regulatory Network in the Response to H(2)O(2).
Plant physiology, 180(3):1629-1646 (2019)
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Duan, J., Lee, K.P., Dogra, V., Zhang, S., Liu, K., Caceres-Moreno, C., Lv, S., Xing, W., Kato, Y., Sakamoto, W., Liu, R., Macho, A.P., Kim, C.
Impaired PSII Proteostasis Promotes Retrograde Signaling via Salicylic Acid.
Plant physiology, 180(4):2182-2197 (2019)
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Che, J., Yokosho, K., Yamaji, N., Ma, J.F.
A Vacuolar Phytosiderophore Transporter Alters Iron and Zinc Accumulation in Polished Rice Grains.
Plant physiology, 181(1):276-288 (2019)
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Peng, Y.Y., Liao, L.L., Liu, S., Nie, M.M., Li, J., Zhang, L.D., Ma, J.F., Chen, Z.C.
Magnesium Deficiency Triggers SGR-Mediated Chlorophyll Degradation for Magnesium Remobilization.
Plant physiology, 181(1):262-275 (2019)
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Wang, S., Yokosho, K., Guo, R., Whelan, J., Ruan, Y., Ma, J.F., Shou, H.
The Soybean Sugar Transporter GmSWEET15 Mediates Sucrose Export from Endosperm to Early Embryo.
Plant physiology, 180(4):2133-2141 (2019)
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Wang, Z., Yamaji, N., Huang, S., Zhang, X., Shi, M., Fu, S., Yang, G., Ma, J.F., Xia, J.
OsCASP1 Is Required for Casparian Strip Formation at Endodermal Cells of Rice Roots for Selective Uptake of Mineral Elements.
The Plant cell, 31(11):2636-2648 (2019)
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Ueki, S.
Phylogeographic characteristics of hypervariable regions in the mitochondrial genome of a cosmopolitan, bloom-forming raphidophyte, Heterosigma akashiwo.
Journal of phycology, 55(4):858-867 (2019)
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Coskun, D., Deshmukh, R., Sonah, H., Menzies, J.G., Reynolds, O., Ma, J.F., Kronzucker, H.J., Belanger, R.R.
The controversies of silicon's role in plant biology.
The New phytologist, 221(1):67-85 (2019)
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Hyodo, K., Suzuki, N., Okuno, T.
Hijacking a host scaffold protein, RACK1, for replication of a plant RNA virus.
The New phytologist, 221(2):935-945 (2019)
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Chen, L., Qin, L., Zhou, L., Li, X., Chen, Z., Sun, L., Wang, W., Lin, Z., Zhao, J., Yamaji, N., Ma, J.F., Gu, M., Xu, G., Liao, H.
A nodule-localized phosphate transporter GmPT7 plays an important role in enhancing symbiotic N(2) fixation and yield in soybean.
The New phytologist, 221(4):2013-2025 (2019)
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Tyerman, S.D., Munns, R., Fricke, W., Arsova, B., Barkla, B.J., Bose, J., Bramley, H., Byrt, C., Chen, Z., Colmer, T.D., Cuin, T., Day, D.A., Foster, K.J., Gilliham, M., Henderson, S.W., Horie, T., Jenkins, C.L.D., Kaiser, B.N., Katsuhara, M., Plett, D., Miklavcic, S.J., Roy, S.J., Rubio, F., Shabala, S., Shelden, M., Soole, K., Taylor, N.L., Tester, M., Watt, M., Wege, S., Wegner, L.H., Wen, Z.
Energy costs of salinity tolerance in crop plants.
The New phytologist, 221(1):25-29 (2019)
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Coskun, D., Deshmukh, R., Sonah, H., Menzies, J.G., Reynolds, O., Ma, J.F., Kronzucker, H.J., Belanger, R.R.
In defence of the selective transport and role of silicon in plants.
The New phytologist, 223(2):514-516 (2019)
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Iida, J., Desaki, Y., Hata, K., Uemura, T., Yasuno, A., Islam, M., Maffei, M.E., Ozawa, R., Nakajima, T., Galis, I., Arimura, G.
Tetranins: new putative spider mite elicitors of host plant defense.
The New phytologist, 224(2):875-885 (2019)
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Wu, Z., Wang, N., Hisano, H., Cao, Y., Wu, F., Liu, W., Bao, Y., Wang, Z., Fu, C.
Simultaneous regulation of F5H in COMT-RNAi transgenic switchgrass alters effects of COMT suppression on syringyl lignin biosynthesis.
Plant biotechnology journal, 17(4):836-845 (2019)
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Nomura, T., Inoue, K., Uehara-Yamaguchi, Y., Yamada, K., Iwata, O., Suzuki, K., Mochida, K.
Highly efficient transgene-free targeted mutagenesis and single-stranded oligodeoxynucleotide-mediated precise knock-in in the industrial microalga Euglena gracilis using Cas9 ribonucleoproteins.
Plant biotechnology journal, 17(11):2032-2034 (2019)
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Ooi, L., Matsuura, T., Munemasa, S., Murata, Y., Katsuhara, M., Hirayama, T., Mori, I.C.
The mechanism of SO(2) -induced stomatal closure differs from O(3) and CO(2) responses and is mediated by nonapoptotic cell death in guard cells.
Plant, cell & environment, 42(2):437-447 (2019)
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Yamaji, N., Ma, J.F.
Bioimaging of multiple elements by high-resolution LA-ICP-MS reveals altered distribution of mineral elements in the nodes of rice mutants.
The Plant journal : for cell and molecular biology, 99(6):1254-1263 (2019)
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Biswas, M.S., Fukaki, H., Mori, I.C., Nakahara, K., Mano, J.
Reactive oxygen species and reactive carbonyl species constitute a feed-forward loop in auxin signaling for lateral root formation.
The Plant journal : for cell and molecular biology, 100(3):536-548 (2019)
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Shahi, S., Eusebio-Cope, A., Kondo, H., Hillman, B.I., Suzuki, N.
Investigation of Host Range of and Host Defense against a Mitochondrially Replicating Mitovirus.
Journal of virology, 93(6):10.1128/JVI.01503-18 (2019)
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Yang, Q., Zhang, Y., Andika, I.B., Liao, Z., Kondo, H., Lu, Y., Cheng, Y., Li, L., He, Y., He, Y., Qi, Y., Sun, Z., Wu, Y., Yan, F., Chen, J., Li, J.
Horizontal Transfer of a Retrotransposon from the Rice Planthopper to the Genome of an Insect DNA Virus.
Journal of virology, 93(6):10.1128/JVI.01516-18 (2019)
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Kuya, N., Sun, J., Iijima, K., Venuprasad, R., Yamamoto, T.
Novel method for evaluation of anaerobic germination in rice and its application to diverse genetic collections.
Breeding science, 69(4):633-639 (2019)
Doi.org/10.1270/jsbbs.19003
Matsuura, T., Mori, I.C., Himi, E., Hirayama, T.
Plant hormone profiling in developing seeds of common wheat (Triticum aestivum L.).
Breeding science, 69(4):601-610 (2019)
Doi.org/10.1270/jsbbs.19030
Nishimura, H., Himi, E., Rikiishi, K., Tsugane, K., Maekawa, M.
Establishment of nDart1-tagged lines of Koshihikari, an elite variety of rice in Japan.
Breeding science, 69(4):696-701 (2019)
Doi.org/10.1270/jsbbs.19049
Yamane, H., Wada, M., Honda, C., Matsuura, T., Ikeda, Y., Hirayama, T., Osako, Y., Gao-Takai, M., Kojima, M., Sakakibara, H., Tao, R.
Overexpression of Prunus DAM6 inhibits growth, represses bud break competency of dormant buds and delays bud outgrowth in apple plants.
PloS one, 14(4):e0214788 (2019)
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Nomura, T., Arakawa, N., Yamamoto, T., Ueda, T., Adachi, S., Yonemaru, J., Abe, A., Takagi, H., Yokoyama, T., Ookawa, T.
Next generation long-culm rice with superior lodging resistance and high grain yield, Monster Rice 1.
PloS one, 14(8):e0221424 (2019)
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Sun, L., Suzuki, N., Jiang, D., Turina, M., Xie, J.
Editorial: Frontiers in Fungal Virus Research.
Frontiers in cellular and infection microbiology, 9:456 (2019)
Doi.org/10.3389/fcimb.2019.00456
Li, H., Bian, R., Liu, Q., Yang, L., Pang, T., Salaipeth, L., Andika, I.B., Kondo, H., Sun, L.
Identification of a Novel Hypovirulence-Inducing Hypovirus From Alternaria alternata.
Frontiers in microbiology, 10:1076 (2019)
Doi.org/10.3389/fmicb.2019.01076
Tanaka, T., Ishikawa, G., Ogiso-Tanaka, E., Yanagisawa, T., Sato, K.
Development of Genome-Wide SNP Markers for Barley via Reference- Based RNA-Seq Analysis.
Frontiers in plant science, 10:577 (2019)
Doi.org/10.3389/fpls.2019.00577
Mitalo, O.W., Tokiwa, S., Kondo, Y., Otsuki, T., Galis, I., Suezawa, K., Kataoka, I., Doan, A.T., Nakano, R., Ushijima, K., Kubo, Y.
Low Temperature Storage Stimulates Fruit Softening and Sugar Accumulation Without Ethylene and Aroma Volatile Production in Kiwifruit.
Frontiers in plant science, 10:888 (2019)
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Kato, Y., Sakamoto, W.
Phosphorylation of the Chloroplastic Metalloprotease FtsH in Arabidopsis Characterized by Phos-Tag SDS-PAGE.
Frontiers in plant science, 10:1080 (2019)
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Oltmanns, A., Hoepfner, L., Scholz, M., Zinzius, K., Schulze, S., Hippler, M.
Novel Insights Into N-Glycan Fucosylation and Core Xylosylation in C. reinhardtii.
Frontiers in plant science, 10:1686 (2019)
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Ube, N., Yabuta, Y., Tohnooka, T., Ueno, K., Taketa, S., Ishihara, A.
Biosynthesis of Phenylamide Phytoalexins in Pathogen-Infected Barley.
International journal of molecular sciences, 20(22):10.3390/ijms20225541 (2019)
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Miyazawa, D., Thanh, L.T.H., Tani, A., Shintani, M., Loc, N.H., Hatta, T., Kimbara, K.
Isolation and Characterization of Genes Responsible for Naphthalene Degradation from Thermophilic Naphthalene Degrader, Geobacillus sp. JF8.
Microorganisms, 8(1):10.3390/microorganisms8010044 (2019)
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Imran, S., Horie, T., Katsuhara, M.
Expression and Ion Transport Activity of Rice OsHKT1;1 Variants.
Plants (Basel, Switzerland), 9(1):10.3390/plants9010016 (2019)
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Jamal, A., Sato, Y., Shahi, S., Shamsi, W., Kondo, H., Suzuki, N.
Novel Victorivirus from a Pakistani Isolate of Alternaria alternata Lacking a Typical Translational Stop/Restart Sequence Signature.
Viruses, 11(6):10.3390/v11060577 (2019)
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Matsumura, M., Sanada-Morimura, S., Otuka, A., Sonoda, S., Van Thanh, D., Van Chien, H., Van Tuong, P., Loc, P.M., Liu, Z., Zhu, Z., Li, J., Wu, G., Huang, S.
Insecticide susceptibilities of the two rice planthoppers Nilaparvata lugens and Sogatella furcifera in East Asia, the Red River Delta, and the Mekong Delta.
Pest management science, 74(2):456-464 (2018)
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Saito, M., Tanaka, T., Sato, K., Vrinten, P., Nakamura, T.
A single nucleotide polymorphism in the "Fra" gene results in fractured starch granules in barley.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 131(2):353-364 (2018)
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Tsunemitsu, Y., Genga, M., Okada, T., Yamaji, N., Ma, J.F., Miyazaki, A., Kato, S., Iwasaki, K., Ueno, D.
A member of cation diffusion facilitator family, MTP11, is required for manganese tolerance and high fertility in rice.
Planta, 248(1):231-241 (2018)
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Amarasinghe, G.K., Arechiga Ceballos, N.G., Banyard, A.C., Basler, C.F., Bavari, S., Bennett, A.J., Blasdell, K.R., Briese, T., Bukreyev, A., Cai, Y., Calisher, C.H., Campos Lawson, C., Chandran, K., Chapman, C.A., Chiu, C.Y., Choi, K., Collins, P.L., Dietzgen, R.G., Dolja, V.V., Dolnik, O., Domier, L.L., Durrwald, R., Dye, J.M., Easton, A.J., Ebihara, H., Echevarria, J.E., Fooks, A.R., Formenty, P.B.H., Fouchier, R.A.M., Freuling, C.M., Ghedin, E., Goldberg, T.L., Hewson, R., Horie, M., Hyndman, T.H., Jiang, D., Kityo, R., Kobinger, G.P., Kondo, H., Koonin, E.V., Krupovic, M., Kurath, G., Lamb, R.A., Lee, B., Leroy, E.M., Maes, P., Maisner, A., Marston, D.A., Mor, S.K., Muller, T., Muhlberger, E., Ramirez, V.M.N., Netesov, S.V., Ng, T.F.F., Nowotny, N., Palacios, G., Patterson, J.L., Paweska, J.T., Payne, S.L., Prieto, K., Rima, B.K., Rota, P., Rubbenstroth, D., Schwemmle, M., Siddell, S., Smither, S.J., Song, Q., Song, T., Stenglein, M.D., Stone, D.M., Takada, A., Tesh, R.B., Thomazelli, L.M., Tomonaga, K., Tordo, N., Towner, J.S., Vasilakis, N., Vazquez-Moron, S., Verdugo, C., Volchkov, V.E., Wahl, V., Walker, P.J., Wang, D., Wang, L., Wellehan, J.F.X., Wiley, M.R., Whitfield, A.E., Wolf, Y.I., Ye, G., Zhang, Y., Kuhn, J.H.
Taxonomy of the order Mononegavirales: update 2018.
Archives of virology, 163(8):2283-2294 (2018)
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Circumnutation and distribution of phytohormones in Vigna angularis epicotyls.
Journal of plant research, 131(1):165-178 (2018)
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Ekimova, G.A., Fedorov, D.N., Tani, A., Doronina, N.V., Trotsenko, Y.A.
Distribution of 1-aminocyclopropane-1-carboxylate deaminase and D-cysteine desulfhydrase genes among type species of the genus Methylobacterium.
Antonie van Leeuwenhoek, 111(10):1723-1734 (2018)
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Dichorhaviruses in their Host Plants and Mite Vectors.
Advances in virus research, 102:119-148 (2018)
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The biological attributes, genome architecture and packaging of diverse multi-component fungal viruses.
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Ergothioneine production using Methylobacterium species, yeast, and fungi.
Journal of bioscience and bioengineering, 126(6):715-722 (2018)
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Genomic characterization of methylotrophy of Oharaeibacter diazotrophicus strain SM30(T).
Journal of bioscience and bioengineering, 126(6):667-675 (2018)
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Kariya, K., Tsuchiya, Y., Sasaki, T., Yamamoto, Y.
Aluminium-induced cell death requires upregulation of NtVPE1 gene coding vacuolar processing enzyme in tobacco (Nicotiana tabacum L.).
Journal of inorganic biochemistry, 181:152-161 (2018)
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Evidence for a novel negative-stranded RNA mycovirus isolated from the plant pathogenic fungus Fusarium graminearum.
Virology, 518:232-240 (2018)
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A neo-virus lifestyle exhibited by a (+)ssRNA virus hosted in an unrelated dsRNA virus: Taxonomic and evolutionary considerations.
Virus research, 244:75-83 (2018)
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Control of seed dormancy and germination by DOG1-AHG1 PP2C phosphatase complex via binding to heme.
Nature communications, 9(1):2132 (2018)
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Takami, T., Ohnishi, N., Kurita, Y., Iwamura, S., Ohnishi, M., Kusaba, M., Mimura, T., Sakamoto, W.
Organelle DNA degradation contributes to the efficient use of phosphate in seed plants.
Nature plants, 4(12):1044-1055 (2018)
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Ogita, S., Nomura, T., Kato, Y., Uehara-Yamaguchi, Y., Inoue, K., Yoshida, T., Sakurai, T., Shinozaki, K., Mochida, K.
Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells.
Scientific reports, 8(1):11347 (2018)
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Kouzai, Y., Noutoshi, Y., Inoue, K., Shimizu, M., Onda, Y., Mochida, K.
Benzothiadiazole, a plant defense inducer, negatively regulates sheath blight resistance in Brachypodium distachyon.
Scientific reports, 8(1):17358 (2018)
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Frost, J.M., Kim, M.Y., Park, G.T., Hsieh, P., Nakamura, M., Lin, S.J.H., Yoo, H., Choi, J., Ikeda, Y., Kinoshita, T., Choi, Y., Zilberman, D., Fischer, R.L.
FACT complex is required for DNA demethylation at heterochromatin during reproduction in Arabidopsis.
Proceedings of the National Academy of Sciences of the United States of America, 115(20):E4720-E4729 (2018)
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Tsunemitsu, Y., Yamaji, N., Ma, J.F., Kato, S., Iwasaki, K., Ueno, D.
Rice reduces Mn uptake in response to Mn stress.
Plant signaling & behavior, 13(1):e1422466 (2018)
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Takahagi, K., Inoue, K., Shimizu, M., Uehara-Yamaguchi, Y., Onda, Y., Mochida, K.
Homoeolog-specific activation of genes for heat acclimation in the allopolyploid grass Brachypodium hybridum.
GigaScience, 7(4):10.1093/gigascience/giy020 (2018)
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Yamatani, H., Kohzuma, K., Nakano, M., Takami, T., Kato, Y., Hayashi, Y., Monden, Y., Okumoto, Y., Abe, T., Kumamaru, T., Tanaka, A., Sakamoto, W., Kusaba, M.
Impairment of Lhca4, a subunit of LHCI, causes high accumulation of chlorophyll and the stay-green phenotype in rice.
Journal of experimental botany, 69(5):1027-1035 (2018)
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OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.
Journal of experimental botany, 69(5):1095-1107 (2018)
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Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of the OsHMA2 promoter.
Journal of experimental botany, 69(10):2743-2752 (2018)
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A fungal Argonaute interferes with RNA interference.
Nucleic acids research, 46(5):2495-2508 (2018)
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Nguyen, Q., Iritani, A., Ohkita, S., Vu, B.V., Yokoya, K., Matsubara, A., Ikeda, K., Suzuki, N., Nakayashiki, H.
A fungal Argonaute interferes with RNA interference.
Nucleic acids research, 46(5):2698 (2018)
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Tamura, K., Yoshida, K., Hiraoka, Y., Sakaguchi, D., Chikugo, A., Mochida, K., Kojoma, M., Mitsuda, N., Saito, K., Muranaka, T., Seki, H.
The Basic Helix-Loop-Helix Transcription Factor GubHLH3 Positively Regulates Soyasaponin Biosynthetic Genes in Glycyrrhiza uralensis.
Plant & cell physiology, 59(4):778-791 (2018)
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Nishimura, K., Matsushita, T., Shikanai, T., Sakamoto, W.
Taiwan-Japan Plant Biology 2017 Spotlight Issue: From Light Signals/Signaling to Photosynthesis and Chloroplast Development.
Plant & cell physiology, 59(6):1099-1103 (2018)
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Chloroplast DNA Dynamics: Copy Number, Quality Control and Degradation.
Plant & cell physiology, 59(6):1120-1127 (2018)
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OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.
Plant & cell physiology, 59(10):2039-2051 (2018)
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Hirayama, T., Lei, G.J., Yamaji, N., Nakagawa, N., Ma, J.F.
The Putative Peptide Gene FEP1 Regulates Iron Deficiency Response in Arabidopsis.
Plant & cell physiology, 59(9):1739-1752 (2018)
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Ikeda, Y., Nishihama, R., Yamaoka, S., Arteaga-Vazquez, M.A., Aguilar-Cruz, A., Grimanelli, D., Pogorelcnik, R., Martienssen, R.A., Yamato, K.T., Kohchi, T., Hirayama, T., Mathieu, O.
Loss of CG Methylation in Marchantia polymorpha Causes Disorganization of Cell Division and Reveals Unique DNA Methylation Regulatory Mechanisms of Non-CG Methylation.
Plant & cell physiology, 59(12):2421-2431 (2018)
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Che, J., Yamaji, N., Yokosho, K., Shen, R.F., Ma, J.F.
Two Genes Encoding a Bacterial-Type ATP-Binding Cassette Transporter are Implicated in Aluminum Tolerance in Buckwheat.
Plant & cell physiology, 59(12):2502-2511 (2018)
Doi.org/10.1093/pcp/pcy171
Vainio, E.J., Chiba, S., Ghabrial, S.A., Maiss, E., Roossinck, M., Sabanadzovic, S., Suzuki, N., Xie, J., Nibert, M., Ictv Report Consortium, NA.
ICTV Virus Taxonomy Profile: Partitiviridae.
The Journal of general virology, 99(1):17-18 (2018)
Doi.org/10.1099/jgv.0.000985
Walker, P.J., Blasdell, K.R., Calisher, C.H., Dietzgen, R.G., Kondo, H., Kurath, G., Longdon, B., Stone, D.M., Tesh, R.B., Tordo, N., Vasilakis, N., Whitfield, A.E., Ictv Report Consortium, NA.
ICTV Virus Taxonomy Profile: Rhabdoviridae.
The Journal of general virology, 99(4):447-448 (2018)
Doi.org/10.1099/jgv.0.001020
Suzuki, N., Ghabrial, S.A., Kim, K., Pearson, M., Marzano, S.L., Yaegashi, H., Xie, J., Guo, L., Kondo, H., Koloniuk, I., Hillman, B.I., Ictv Report Consortium, NA.
ICTV Virus Taxonomy Profile: Hypoviridae.
The Journal of general virology, 99(5):615-616 (2018)
Doi.org/10.1099/jgv.0.001055
Shao, J.F., Yamaji, N., Liu, X.W., Yokosho, K., Shen, R.F., Ma, J.F.
Preferential Distribution of Boron to Developing Tissues Is Mediated by the Intrinsic Protein OsNIP3.
Plant physiology, 176(2):1739-1750 (2018)
Doi.org/10.1104/pp.17.01641
Ohnishi, N., Zhang, L., Sakamoto, W.
VIPP1 Involved in Chloroplast Membrane Integrity Has GTPase Activity in Vitro.
Plant physiology, 177(1):328-338 (2018)
Doi.org/10.1104/pp.18.00145
Nakamura, S., Hidema, J., Sakamoto, W., Ishida, H., Izumi, M.
Selective Elimination of Membrane-Damaged Chloroplasts via Microautophagy.
Plant physiology, 177(3):1007-1026 (2018)
Doi.org/10.1104/pp.18.00444
Kato, Y., Hyodo, K., Sakamoto, W.
The Photosystem II Repair Cycle Requires FtsH Turnover through the EngA GTPase.
Plant physiology, 178(2):596-611 (2018)
Doi.org/10.1104/pp.18.00652
Lv, H., Sahin, N., Tani, A.
Isolation and genomic characterization of Novimethylophilus kurashikiensis gen. nov. sp. nov., a new lanthanide-dependent methylotrophic species of Methylophilaceae.
Environmental microbiology, 20(3):1204-1223 (2018)
Doi.org/10.1111/1462-2920.14062
Arjona-Lopez, J.M., Telengech, P., Jamal, A., Hisano, S., Kondo, H., Yelin, M.D., Arjona-Girona, I., Kanematsu, S., Lopez-Herrera, C.J., Suzuki, N.
Novel, diverse RNA viruses from Mediterranean isolates of the phytopathogenic fungus, Rosellinia necatrix: insights into evolutionary biology of fungal viruses.
Environmental microbiology, 20(4):1464-1483 (2018)
Doi.org/10.1111/1462-2920.14065
Kouzai, Y., Kimura, M., Watanabe, M., Kusunoki, K., Osaka, D., Suzuki, T., Matsui, H., Yamamoto, M., Ichinose, Y., Toyoda, K., Matsuura, T., Mori, I.C., Hirayama, T., Minami, E., Nishizawa, Y., Inoue, K., Onda, Y., Mochida, K., Noutoshi, Y.
Salicylic acid-dependent immunity contributes to resistance against Rhizoctonia solani, a necrotrophic fungal agent of sheath blight, in rice and Brachypodium distachyon.
The New phytologist, 217(2):771-783 (2018)
Doi.org/10.1111/nph.14849
Che, J., Yamaji, N., Ma, J.F.
Efficient and flexible uptake system for mineral elements in plants.
The New phytologist, 219(2):513-517 (2018)
Doi.org/10.1111/nph.15140
Sun, S., Chen, Y., Che, J., Konishi, N., Tang, Z., Miller, A.J., Ma, J.F., Zhao, F.
Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.
The New phytologist, 219(2):641-653 (2018)
Doi.org/10.1111/nph.15190
Che, J., Tsutsui, T., Yokosho, K., Yamaji, N., Ma, J.F.
Functional characterization of an aluminum (Al)-inducible transcription factor, ART2, revealed a different pathway for Al tolerance in rice.
The New phytologist, 220(1):209-218 (2018)
Doi.org/10.1111/nph.15252
Deng, F., Yamaji, N., Ma, J.F., Lee, S., Jeon, J., Martinoia, E., Lee, Y., Song, W.
Engineering rice with lower grain arsenic.
Plant biotechnology journal, 16(10):1691-1699 (2018)
Doi.org/10.1111/pbi.12905
Shinya, T., Yasuda, S., Hyodo, K., Tani, R., Hojo, Y., Fujiwara, Y., Hiruma, K., Ishizaki, T., Fujita, Y., Saijo, Y., Galis, I.
Integration of danger peptide signals with herbivore-associated molecular pattern signaling amplifies anti-herbivore defense responses in rice.
The Plant journal : for cell and molecular biology, 94(4):626-637 (2018)
Doi.org/10.1111/tpj.13883
Chiba, S., Jamal, A., Suzuki, N.
First Evidence for Internal Ribosomal Entry Sites in Diverse Fungal Virus Genomes.
mBio, 9(2):10.1128/mBio.02350-17 (2018)
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Masuda, S., Suzuki, Y., Fujitani, Y., Mitsui, R., Nakagawa, T., Shintani, M., Tani, A.
Lanthanide-Dependent Regulation of Methylotrophy in Methylobacteriumaquaticum Strain 22A.
mSphere, 3(1):10.1128/mSphere.00462-17 (2018)
Doi.org/10.1128/mSphere.00462-17
Ohashi, M., Ishiyama, K., Kojima, S., Konishi, N., Sasaki, K., Miyao, M., Hayakawa, T., Yamaya, T.
Outgrowth of Rice Tillers Requires Availability of Glutamine in the Basal Portions of Shoots.
Rice (New York, N.Y.), 11(1):31 (2018)
Doi.org/10.1186/s12284-018-0225-2
Tominaga, J., Nakahara, Y., Horikawa, D., Tanaka, A., Kondo, M., Kamei, Y., Takami, T., Sakamoto, W., Unno, K., Sakamoto, A., Shimada, H.
Overexpression of the protein disulfide isomerase AtCYO1 in chloroplasts slows dark-induced senescence in Arabidopsis.
BMC plant biology, 18(1):80 (2018)
Doi.org/10.1186/s12870-018-1294-5
Takagi, H., Watanabe, S., Tanaka, S., Matsuura, T., Mori, I.C., Hirayama, T., Shimada, H., Sakamoto, A.
Disruption of ureide degradation affects plant growth and development during and after transition from vegetative to reproductive stages.
BMC plant biology, 18(1):287 (2018)
Doi.org/10.1186/s12870-018-1491-2
Okada, M., Yoshida, K., Nishijima, R., Michikawa, A., Motoi, Y., Sato, K., Takumi, S.
RNA-seq analysis reveals considerable genetic diversity and provides genetic markers saturating all chromosomes in the diploid wild wheat relative Aegilops umbellulata.
BMC plant biology, 18(1):271 (2018)
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Chiou, W., Tsugane, K., Kawamoto, T., Maekawa, M.
Easy sectioning of whole grain of rice using cryomicrotome.
Breeding science, 68(3):381-384 (2018)
Doi.org/10.1270/jsbbs.17103
Kodama, A., Narita, R., Yamaguchi, M., Hisano, H., Adachi, S., Takagi, H., Ookawa, T., Sato, K., Hirasawa, T.
QTLs maintaining grain fertility under salt stress detected by exome QTL-seq and interval mapping in barley.
Breeding science, 68(5):561-570 (2018)
Doi.org/10.1270/jsbbs.18082
Li, L., Andika, I.B., Xu, Y., Zhang, Y., Xin, X., Hu, L., Sun, Z., Hong, G., Chen, Y., Yan, F., Yang, J., Li, J., Chen, J.
Corrigendum: Differential Characteristics of Viral siRNAs Between Leaves and Roots of Wheat Plants Naturally Infected with Wheat Yellow Mosaic Virus, a Soil-Borne Virus.
Frontiers in microbiology, 9:1477 (2018)
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Kato, Y., Sakamoto, W.
FtsH Protease in the Thylakoid Membrane: Physiological Functions and the Regulation of Protease Activity.
Frontiers in plant science, 9:855 (2018)
Doi.org/10.3389/fpls.2018.00855
Takahagi, K., Inoue, K., Mochida, K.
Gene Co-expression Network Analysis Suggests the Existence of Transcriptional Modules Containing a High Proportion of Transcriptionally Differentiated Homoeologs in Hexaploid Wheat.
Frontiers in plant science, 9:1163 (2018)
Doi.org/10.3389/fpls.2018.01163
Mochida, K., Koda, S., Inoue, K., Nishii, R.
Statistical and Machine Learning Approaches to Predict Gene Regulatory Networks From Transcriptome Datasets.
Frontiers in plant science, 9:1770 (2018)
Doi.org/10.3389/fpls.2018.01770
Crofts, N., Iizuka, Y., Abe, N., Miura, S., Kikuchi, K., Matsushima, R., Fujita, N.
Rice Mutants Lacking Starch Synthase I or Branching Enzyme IIb Activity Altered Starch Biosynthetic Protein Complexes.
Frontiers in plant science, 9:1817 (2018)
Doi.org/10.3389/fpls.2018.01817
Oda, Y., Kobayashi, N.I., Tanoi, K., Ma, J.F., Itou, Y., Katsuhara, M., Itou, T., Horie, T.
T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.
International journal of molecular sciences, 19(1):10.3390/ijms19010235 (2018)
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Chu, H.D., Nguyen, K.H., Watanabe, Y., Le, D.T., Pham, T.L.T., Mochida, K., Tran, L.P.
Identification, Structural Characterization and Gene Expression Analysis of Members of the Nuclear Factor-Y Family in Chickpea (Cicer arietinum L.) under Dehydration and Abscisic Acid Treatments.
International journal of molecular sciences, 19(11):10.3390/ijms19113290 (2018)
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Nishijima, R., Yoshida, K., Sakaguchi, K., Yoshimura, S., Sato, K., Takumi, S.
RNA Sequencing-Based Bulked Segregant Analysis Facilitates Efficient D-genome Marker Development for a Specific Chromosomal Region of Synthetic Hexaploid Wheat.
International journal of molecular sciences, 19(12):10.3390/ijms19123749 (2018)
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Mori, I.C., Nobukiyo, Y., Nakahara, Y., Shibasaka, M., Furuichi, T., Katsuhara, M.
A Cyclic Nucleotide-Gated Channel, HvCNGC2-3, Is Activated by the Co-Presence of Na(+) and K(+) and Permeable to Na(+) and K(+) Non-Selectively.
Plants (Basel, Switzerland), 7(3):10.3390/plants7030061 (2018)
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Luque, D., Mata, C.P., Suzuki, N., Ghabrial, S.A., Caston, J.R.
Capsid Structure of dsRNA Fungal Viruses.
Viruses, 10(9):10.3390/v10090481 (2018)
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Mizutani, Y., Abraham, A., Uesaka, K., Kondo, H., Suga, H., Suzuki, N., Chiba, S.
Novel Mitoviruses and a Unique Tymo-Like Virus in Hypovirulent and Virulent Strains of the Fusarium Head Blight Fungus, Fusarium boothii.
Viruses, 10(11):10.3390/v10110584 (2018)
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Wahibah, N.N., Tsutsui, T., Tamaoki, D., Sato, K., Nishiuchi, T.
Expression of barley Glutathione S-Transferase13 gene reduces accumulation of reactive oxygen species by trichothecenes and paraquat in Arabidopsis plants.
Plant biotechnology (Tokyo, Japan), 35(1):71-79 (2018)
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Li, C., Chen, G., Mishina, K., Yamaji, N., Ma, J.F., Yukuhiro, F., Tagiri, A., Liu, C., Pourkheirandish, M., Anwar, N., Ohta, M., Zhao, P., Lundqvist, U., Li, X., Komatsuda, T.
A GDSL-motif esterase/acyltransferase/lipase is responsible for leaf water retention in barley.
Plant direct, 1(5):e00025 (2017)
Doi.org/10.1002/pld3.25
Hisano, H., Meints, B., Moscou, M.J., Cistue, L., Echavarri, B., Sato, K., Hayes, P.M.
Selection of transformation-efficient barley genotypes based on TFA (transformation amenability) haplotype and higher resolution mapping of the TFA loci.
Plant cell reports, 36(4):611-620 (2017)
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Taxonomy of the order Mononegavirales: update 2017.
Archives of virology, 162(8):2493-2504 (2017)
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Kameoka, S., Sakio, H., Abe, H., Ikeda, H., Setoguchi, H.
Genetic structure of Hepatica nobilis var. japonica, focusing on within population flower color polymorphism.
Journal of plant research, 130(2):263-271 (2017)
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Sobhy, I.S., Miyake, A., Shinya, T., Galis, I.
Oral Secretions Affect HIPVs Induced by Generalist (Mythimna loreyi) and Specialist (Parnara guttata) Herbivores in Rice.
Journal of chemical ecology, 43(9):929-943 (2017)
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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.
Cell, 171(2):287-304.e15 (2017)
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Okumura, M., Fujitani, Y., Maekawa, M., Charoenpanich, J., Murage, H., Kimbara, K., Sahin, N., Tani, A.
Cultivable Methylobacterium species diversity in rice seeds identified with whole-cell matrix-assisted laser desorption/ionization time-of-flight mass spectrometric analysis.
Journal of bioscience and bioengineering, 123(2):190-196 (2017)
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Chungopast, S., Duangkhet, M., Tajima, S., Ma, J.F., Nomura, M.
Iron-induced nitric oxide leads to an increase in the expression of ferritin during the senescence of Lotus japonicus nodules.
Journal of plant physiology, 208:40-46 (2017)
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Sumida, S., Ito, M., Galis, I., Nakatani, H., Shinya, T., Ohnishi, K., Hikichi, Y., Kiba, A.
Phosphoinositide 3-kinase participates in l-methionine sulfoximine-induced cell death via salicylic acid mediated signaling in Nicotiana benthamiana.
Journal of plant physiology, 218:167-170 (2017)
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Takanashi, K., Yamada, Y., Sasaki, T., Yamamoto, Y., Sato, F., Yazaki, K.
A multidrug and toxic compound extrusion transporter mediates berberine accumulation into vacuoles in Coptis japonica.
Phytochemistry, 138:76-82 (2017)
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Ube, N., Nishizaka, M., Ichiyanagi, T., Ueno, K., Taketa, S., Ishihara, A.
Evolutionary changes in defensive specialized metabolism in the genus Hordeum.
Phytochemistry, 141:1-10 (2017)
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Shao, J.F., Yamaji, N., Shen, R.F., Ma, J.F.
The Key to Mn Homeostasis in Plants: Regulation of Mn Transporters.
Trends in plant science, 22(3):215-224 (2017)
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Kondo, H., Hirota, K., Maruyama, K., Andika, I.B., Suzuki, N.
A possible occurrence of genome reassortment among bipartite rhabdoviruses.
Virology, 508:18-25 (2017)
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Tajima, Y., Iwakawa, H., Hyodo, K., Kaido, M., Mise, K., Okuno, T.
Requirement for eukaryotic translation initiation factors in cap-independent translation differs between bipartite genomic RNAs of red clover necrotic mosaic virus.
Virology, 509:152-158 (2017)
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Hyodo, K., Nagai, H., Okuno, T.
Dual function of a cis-acting RNA element that acts as a replication enhancer and a translation repressor in a plant positive-stranded RNA virus.
Virology, 512:74-82 (2017)
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Dietzgen, R.G., Kondo, H., Goodin, M.M., Kurath, G., Vasilakis, N.
The family Rhabdoviridae: mono- and bipartite negative-sense RNA viruses with diverse genome organization and common evolutionary origins.
Virus research, 227:158-170 (2017)
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Yamaji, N., Takemoto, Y., Miyaji, T., Mitani-Ueno, N., Yoshida, K.T., Ma, J.F.
Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.
Nature, 541(7635):92-95 (2017)
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Ikeda, Y., Pelissier, T., Bourguet, P., Becker, C., Pouch-Pelissier, M., Pogorelcnik, R., Weingartner, M., Weigel, D., Deragon, J., Mathieu, O.
Arabidopsis proteins with a transposon-related domain act in gene silencing.
Nature communications, 8:15122 (2017)
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Gupta, A., Hisano, H., Hojo, Y., Matsuura, T., Ikeda, Y., Mori, I.C., Senthil-Kumar, M.
Global profiling of phytohormone dynamics during combined drought and pathogen stress in Arabidopsis thaliana reveals ABA and JA as major regulators.
Scientific reports, 7(1):4017 (2017)
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Miwa, A., Sawada, Y., Tamaoki, D., Yokota Hirai, M., Kimura, M., Sato, K., Nishiuchi, T.
Nicotinamide mononucleotide and related metabolites induce disease resistance against fungal phytopathogens in Arabidopsis and barley.
Scientific reports, 7(1):6389 (2017)
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Sano, N., Kim, J., Onda, Y., Nomura, T., Mochida, K., Okamoto, M., Seo, M.
RNA-Seq using bulked recombinant inbred line populations uncovers the importance of brassinosteroid for seed longevity after priming treatments.
Scientific reports, 7(1):8095 (2017)
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Nagaki, K., Yamaji, N., Murata, M.
ePro-ClearSee: a simple immunohistochemical method that does not require sectioning of plant samples.
Scientific reports, 7:42203 (2017)
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Hyodo, K., Hashimoto, K., Kuchitsu, K., Suzuki, N., Okuno, T.
Harnessing host ROS-generating machinery for the robust genome replication of a plant RNA virus.
Proceedings of the National Academy of Sciences of the United States of America, 114(7):E1282-E1290 (2017)
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Andika, I.B., Jamal, A., Kondo, H., Suzuki, N.
SAGA complex mediates the transcriptional up-regulation of antiviral RNA silencing.
Proceedings of the National Academy of Sciences of the United States of America, 114(17):E3499-E3506 (2017)
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Andika, I.B., Wei, S., Cao, C., Salaipeth, L., Kondo, H., Sun, L.
Phytopathogenic fungus hosts a plant virus: A naturally occurring cross-kingdom viral infection.
Proceedings of the National Academy of Sciences of the United States of America, 114(46):12267-12272 (2017)
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Kokubo, Y., Nishizaka, M., Ube, N., Yabuta, Y., Tebayashi, S., Ueno, K., Taketa, S., Ishihara, A.
Distribution of the tryptophan pathway-derived defensive secondary metabolites gramine and benzoxazinones in Poaceae.
Bioscience, biotechnology, and biochemistry, 81(3):431-440 (2017)
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Khokon, M.A.R., Salam, M.A., Jammes, F., Ye, W., Hossain, M.A., Okuma, E., Nakamura, Y., Mori, I.C., Kwak, J.M., Murata, Y.
MPK9 and MPK12 function in SA-induced stomatal closure in Arabidopsis thaliana.
Bioscience, biotechnology, and biochemistry, 81(7):1394-1400 (2017)
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Hyodo, K., Suzuki, N., Mise, K., Okuno, T.
Roles of superoxide anion and hydrogen peroxide during replication of two unrelated plant RNA viruses in Nicotiana benthamiana.
Plant signaling & behavior, 12(6):e1338223 (2017)
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Takagi, H., Ishiga, Y., Watanabe, S., Konishi, T., Egusa, M., Akiyoshi, N., Matsuura, T., Mori, I.C., Hirayama, T., Kaminaka, H., Shimada, H., Sakamoto, A.
Allantoin, a stress-related purine metabolite, can activate jasmonate signaling in a MYC2-regulated and abscisic acid-dependent manner.
Journal of experimental botany, 68(17):5011 (2017)
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Tzin, V., Hojo, Y., Strickler, S.R., Bartsch, L.J., Archer, C.M., Ahern, K.R., Zhou, S., Christensen, S.A., Galis, I., Mueller, L.A., Jander, G.
Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding.
Journal of experimental botany, 68(16):4709-4723 (2017)
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Feng Shao, J., Che, J., Yamaji, N., Fang Shen, R., Feng Ma, J.
Silicon reduces cadmium accumulation by suppressing expression of transporter genes involved in cadmium uptake and translocation in rice.
Journal of experimental botany, 68(20):5641-5651 (2017)
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Takemoto, Y., Tsunemitsu, Y., Fujii-Kashino, M., Mitani-Ueno, N., Yamaji, N., Ma, J.F., Kato, S., Iwasaki, K., Ueno, D.
The Tonoplast-Localized Transporter MTP8.2 Contributes to Manganese Detoxification in the Shoots and Roots of Oryza sativa L.
Plant & cell physiology, 58(9):1573-1582 (2017)
Doi.org/10.1093/pcp/pcx082
Lei, G.J., Yokosho, K., Yamaji, N., Ma, J.F.
Two MATE Transporters with Different Subcellular Localization are Involved in Al Tolerance in Buckwheat.
Plant & cell physiology, 58(12):2179-2189 (2017)
Doi.org/10.1093/pcp/pcx152
Postler, T.S., Clawson, A.N., Amarasinghe, G.K., Basler, C.F., Bavari, S., Benko, M., Blasdell, K.R., Briese, T., Buchmeier, M.J., Bukreyev, A., Calisher, C.H., Chandran, K., Charrel, R., Clegg, C.S., Collins, P.L., Juan Carlos, D.L.T., Derisi, J.L., Dietzgen, R.G., Dolnik, O., Durrwald, R., Dye, J.M., Easton, A.J., Emonet, S., Formenty, P., Fouchier, R.A.M., Ghedin, E., Gonzalez, J., Harrach, B., Hewson, R., Horie, M., Jiang, D., Kobinger, G., Kondo, H., Kropinski, A.M., Krupovic, M., Kurath, G., Lamb, R.A., Leroy, E.M., Lukashevich, I.S., Maisner, A., Mushegian, A.R., Netesov, S.V., Nowotny, N., Patterson, J.L., Payne, S.L., PaWeska, J.T., Peters, C.J., Radoshitzky, S.R., Rima, B.K., Romanowski, V., Rubbenstroth, D., Sabanadzovic, S., Sanfacon, H., Salvato, M.S., Schwemmle, M., Smither, S.J., Stenglein, M.D., Stone, D.M., Takada, A., Tesh, R.B., Tomonaga, K., Tordo, N., Towner, J.S., Vasilakis, N., Volchkov, V.E., Wahl-Jensen, V., Walker, P.J., Wang, L., Varsani, A., Whitfield, A.E., Zerbini, F.M., Kuhn, J.H.
Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials.
Systematic biology, 66(3):463-473 (2017)
Doi.org/10.1093/sysbio/syw096
Shimada, T., Endo, T., Rodriguez, A., Fujii, H., Goto, S., Matsuura, T., Hojo, Y., Ikeda, Y., Mori, I.C., Fujikawa, T., Pena, L., Omura, M.
Ectopic accumulation of linalool confers resistance to Xanthomonas citri subsp. citri in transgenic sweet orange plants.
Tree physiology, 37(5):654-664 (2017)
Doi.org/10.1093/treephys/tpw134
Ishiga, Y., Watanabe, M., Ishiga, T., Tohge, T., Matsuura, T., Ikeda, Y., Hoefgen, R., Fernie, A.R., Mysore, K.S.
The SAL-PAP Chloroplast Retrograde Pathway Contributes to Plant Immunity by Regulating Glucosinolate Pathway and Phytohormone Signaling.
Molecular plant-microbe interactions : MPMI, 30(10):829-841 (2017)
Doi.org/10.1094/MPMI-03-17-0055-R
Higashi, A., Nagai, S., Seoane, S., Ueki, S.
A hypervariable mitochondrial protein coding sequence associated with geographical origin in a cosmopolitan bloom-forming alga, Heterosigma akashiwo.
Biology letters, 13(4):10.1098/rsbl.2016.0976 (2017)
Doi.org/10.1098/rsbl.2016.0976
Lv, H., Masuda, S., Fujitani, Y., Sahin, N., Tani, A.
Oharaeibacter diazotrophicus gen. nov., sp. nov., a diazotrophic and facultatively methylotrophic bacterium, isolated from rice rhizosphere.
International journal of systematic and evolutionary microbiology, 67(3):576-582 (2017)
Doi.org/10.1099/ijsem.0.001660
Kohzuma, K., Sato, Y., Ito, H., Okuzaki, A., Watanabe, M., Kobayashi, H., Nakano, M., Yamatani, H., Masuda, Y., Nagashima, Y., Fukuoka, H., Yamada, T., Kanazawa, A., Kitamura, K., Tabei, Y., Ikeuchi, M., Sakamoto, W., Tanaka, A., Kusaba, M.
The Non-Mendelian Green Cotyledon Gene in Soybean Encodes a Small Subunit of Photosystem II.
Plant physiology, 173(4):2138-2147 (2017)
Doi.org/10.1104/pp.16.01589
Chen, Z.C., Yamaji, N., Horie, T., Che, J., Li, J., An, G., Ma, J.F.
A Magnesium Transporter OsMGT1 Plays a Critical Role in Salt Tolerance in Rice.
Plant physiology, 174(3):1837-1849 (2017)
Doi.org/10.1104/pp.17.00532
Salesse, C., Sharwood, R., Sakamoto, W., Stern, D.
The Rubisco Chaperone BSD2 May Regulate Chloroplast Coverage in Maize Bundle Sheath Cells.
Plant physiology, 175(4):1624-1633 (2017)
Doi.org/10.1104/pp.17.01346
Wang, S., Yoshinari, A., Shimada, T., Hara-Nishimura, I., Mitani-Ueno, N., Feng Ma, J., Naito, S., Takano, J.
Polar Localization of the NIP5;1 Boric Acid Channel Is Maintained by Endocytosis and Facilitates Boron Transport in Arabidopsis Roots.
The Plant cell, 29(4):824-842 (2017)
Doi.org/10.1105/tpc.16.00825
Ikeda, H., Eidesen, P.B., Yakubov, V., Barkalov, V., Brochmann, C., Setoguchi, H.
Late Pleistocene origin of the entire circumarctic range of the arctic-alpine plant Kalmia procumbens.
Molecular ecology, 26(20):5773-5783 (2017)
Doi.org/10.1111/mec.14325
Lei, G.J., Yokosho, K., Yamaji, N., Fujii-Kashino, M., Ma, J.F.
Functional characterization of two half-size ABC transporter genes in aluminium-accumulating buckwheat.
The New phytologist, 215(3):1080-1089 (2017)
Doi.org/10.1111/nph.14648
Rhee, J., Horie, T., Sasano, S., Nakahara, Y., Katsuhara, M.
Identification of an H(2) O(2) permeable PIP aquaporin in barley and a serine residue promoting H(2) O(2) transport.
Physiologia plantarum, 159(1):120-128 (2017)
Doi.org/10.1111/ppl.12508
Mochida, K., Sakurai, T., Seki, H., Yoshida, T., Takahagi, K., Sawai, S., Uchiyama, H., Muranaka, T., Saito, K.
Draft genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume.
The Plant journal : for cell and molecular biology, 89(2):181-194 (2017)
Doi.org/10.1111/tpj.13385
Kobayashi, N.I., Yamaji, N., Yamamoto, H., Okubo, K., Ueno, H., Costa, A., Tanoi, K., Matsumura, H., Fujii-Kashino, M., Horiuchi, T., Nayef, M.A., Shabala, S., An, G., Ma, J.F., Horie, T.
OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.
The Plant journal : for cell and molecular biology, 91(4):657-670 (2017)
Doi.org/10.1111/tpj.13595
Nasr Esfahani, M., Inoue, K., Chu, H.D., Nguyen, K.H., Van Ha, C., Watanabe, Y., Burritt, D.J., Herrera-Estrella, L., Mochida, K., Tran, L.P.
Comparative transcriptome analysis of nodules of two Mesorhizobium-chickpea associations with differential symbiotic efficiency under phosphate deficiency.
The Plant journal : for cell and molecular biology, 91(5):911-926 (2017)
Doi.org/10.1111/tpj.13616
Seoane, S., Hyodo, K., Ueki, S.
Chloroplast Genome Sequences of Seven Strains of the Bloom-Forming Raphidophyte Heterosigma akashiwo.
Genome announcements, 5(41):10.1128/genomeA.01030-17 (2017)
Doi.org/10.1128/genomeA.01030-17
Ratcliffe, S., Jugdaohsingh, R., Vivancos, J., Marron, A., Deshmukh, R., Ma, J.F., Mitani-Ueno, N., Robertson, J., Wills, J., Boekschoten, M.V., Muller, M., Mawhinney, R.C., Kinrade, S.D., Isenring, P., Belanger, R.R., Powell, J.J.
Identification of a mammalian silicon transporter.
American journal of physiology. Cell physiology, 312(5):C550-C561 (2017)
Doi.org/10.1152/ajpcell.00219.2015
Bettembourg, M., Dal-Soglio, M., Bureau, C., Vernet, A., Dardoux, A., Portefaix, M., Bes, M., Meynard, D., Mieulet, D., Cayrol, B., Perin, C., Courtois, B., Ma, J.F., Dievart, A.
Root cone angle is enlarged in docs1 LRR-RLK mutants in rice.
Rice (New York, N.Y.), 10(1):50 (2017)
Doi.org/10.1186/s12284-017-0190-1
Hisano, H., Sakamoto, K., Takagi, H., Terauchi, R., Sato, K.
Exome QTL-seq maps monogenic locus and QTLs in barley.
BMC genomics, 18(1):125 (2017)
Doi.org/10.1186/s12864-017-3511-2
Onishi, K., Yamane, M., Yamaji, N., Tokui, M., Kanamori, H., Wu, J., Komatsuda, T., Sato, K.
Sequence differences in the seed dormancy gene Qsd1 among various wheat genomes.
BMC genomics, 18(1):497 (2017)
Doi.org/10.1186/s12864-017-3880-6
Onishi, K., Yamane, M., Yamaji, N., Tokui, M., Kanamori, H., Wu, J., Komatsuda, T., Sato, K.
Erratum to: Sequence differences in the seed dormancy gene Qsd1 among various wheat genomes.
BMC genomics, 18(1):663 (2017)
Doi.org/10.1186/s12864-017-4046-2
Ishikawa, R., Iwata, M., Taniko, K., Monden, G., Miyazaki, N., Orn, C., Tsujimura, Y., Yoshida, S., Ma, J.F., Ishii, T.
Detection of quantitative trait loci controlling grain zinc concentration using Australian wild rice, Oryza meridionalis, a potential genetic resource for biofortification of rice.
PloS one, 12(10):e0187224 (2017)
Doi.org/10.1371/journal.pone.0187224
Mata, C.P., Luque, D., Gomez-Blanco, J., Rodriguez, J.M., Gonzalez, J.M., Suzuki, N., Ghabrial, S.A., Carrascosa, J.L., Trus, B.L., Caston, J.R.
Acquisition of functions on the outer capsid surface during evolution of double-stranded RNA fungal viruses.
PLoS pathogens, 13(12):e1006755 (2017)
Doi.org/10.1371/journal.ppat.1006755
Li, L., Andika, I.B., Xu, Y., Zhang, Y., Xin, X., Hu, L., Sun, Z., Hong, G., Chen, Y., Yan, F., Yang, J., Li, J., Chen, J.
Differential Characteristics of Viral siRNAs between Leaves and Roots of Wheat Plants Naturally Infected with Wheat Yellow Mosaic Virus, a Soil-Borne Virus.
Frontiers in microbiology, 8:1802 (2017)
Doi.org/10.3389/fmicb.2017.01802
Sakurai, G., Yamaji, N., Mitani-Ueno, N., Yokozawa, M., Ono, K., Ma, J.F.
A Model of Silicon Dynamics in Rice: An Analysis of the Investment Efficiency of Si Transporters.
Frontiers in plant science, 8:1187 (2017)
Doi.org/10.3389/fpls.2017.01187
Nakamura, S., Pourkheirandish, M., Morishige, H., Sameri, M., Sato, K., Komatsuda, T.
Quantitative Trait Loci and Maternal Effects Affecting the Strong Grain Dormancy of Wild Barley (Hordeum vulgare ssp. spontaneum).
Frontiers in plant science, 8:1840 (2017)
Doi.org/10.3389/fpls.2017.01840
Koda, S., Onda, Y., Matsui, H., Takahagi, K., Yamaguchi-Uehara, Y., Shimizu, M., Inoue, K., Yoshida, T., Sakurai, T., Honda, H., Eguchi, S., Nishii, R., Mochida, K.
Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon.
Frontiers in plant science, 8:2055 (2017)
Doi.org/10.3389/fpls.2017.02055
2016
Murata, M.
Artificial Chromosome Preparation in Arabidopsis.
Current protocols in plant biology, 1(1):53-66 (2016)
Doi.org/10.1002/cppb.20010
Nagaki, K.
Chromatin Immunoprecipitation for Detecting Epigenetic Marks on Plant Nucleosomes.
Methods in molecular biology (Clifton, N.J.), 1469:197-206 (2016)
Doi.org/10.1007/978-1-4939-4931-1_16
Fujimoto, S., Matsunaga, S., Murata, M.
Mapping of T-DNA and Ac/Ds by TAIL-PCR to Analyze Chromosomal Rearrangements.
Methods in molecular biology (Clifton, N.J.), 1469:207-16 (2016)
Doi.org/10.1007/978-1-4939-4931-1_17
Murata, M., Kanatani, A., Kashihara, K.
One-Step Generation of Chromosomal Rearrangements in Rice.
Methods in molecular biology (Clifton, N.J.), 1469:63-76 (2016)
Doi.org/10.1007/978-1-4939-4931-1_5
Nishijima, R., Yoshida, K., Motoi, Y., Sato, K., Takumi, S.
Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions.
Molecular genetics and genomics : MGG, 291(4):1681-94 (2016)
Doi.org/10.1007/s00438-016-1211-2
Afonso, C.L., Amarasinghe, G.K., Banyai, K., Bao, Y., Basler, C.F., Bavari, S., Bejerman, N., Blasdell, K.R., Briand, F., Briese, T., Bukreyev, A., Calisher, C.H., Chandran, K., Cheng, J., Clawson, A.N., Collins, P.L., Dietzgen, R.G., Dolnik, O., Domier, L.L., Durrwald, R., Dye, J.M., Easton, A.J., Ebihara, H., Farkas, S.L., Freitas-Astua, J., Formenty, P., Fouchier, R.A.M., Fu, Y., Ghedin, E., Goodin, M.M., Hewson, R., Horie, M., Hyndman, T.H., Jiang, D., Kitajima, E.W., Kobinger, G.P., Kondo, H., Kurath, G., Lamb, R.A., Lenardon, S., Leroy, E.M., Li, C., Lin, X., Liu, L., Longdon, B., Marton, S., Maisner, A., Muhlberger, E., Netesov, S.V., Nowotny, N., Patterson, J.L., Payne, S.L., Paweska, J.T., Randall, R.E., Rima, B.K., Rota, P., Rubbenstroth, D., Schwemmle, M., Shi, M., Smither, S.J., Stenglein, M.D., Stone, D.M., Takada, A., Terregino, C., Tesh, R.B., Tian, J., Tomonaga, K., Tordo, N., Towner, J.S., Vasilakis, N., Verbeek, M., Volchkov, V.E., Wahl-Jensen, V., Walsh, J.A., Walker, P.J., Wang, D., Wang, L., Wetzel, T., Whitfield, A.E., Xie, J.T., Yuen, K., Zhang, Y., Kuhn, J.H.
Taxonomy of the order Mononegavirales: update 2016.
Archives of virology, 161(8):2351-60 (2016)
Doi.org/10.1007/s00705-016-2880-1
Suzuki, K., Costa, A., Nakayama, H., Katsuhara, M., Shinmyo, A., Horie, T.
OsHKT2;2/1-mediated Na(+) influx over K(+) uptake in roots potentially increases toxic Na(+) accumulation in a salt-tolerant landrace of rice Nona Bokra upon salinity stress.
Journal of plant research, 129(1):67-77 (2016)
Doi.org/10.1007/s10265-015-0764-1
Nishiyama, Y., Hanafusa, T., Yamashita, J., Yamamoto, Y., Ono, T.
Adsorption and removal of strontium in aqueous solution by synthetic hydroxyapatite.
Journal of radioanalytical and nuclear chemistry, 307:1279-1285 (2016)
Doi.org/10.1007/s10967-015-4228-9
Sasaki, T., Tsuchiya, Y., Ariyoshi, M., Ryan, P.R., Yamamoto, Y.
A chimeric protein of aluminum-activated malate transporter generated from wheat and Arabidopsis shows enhanced response to trivalent cations.
Biochimica et biophysica acta, 1858(7 Pt A):1427-35 (2016)
Doi.org/10.1016/j.bbamem.2016.03.026
Hyodo, K., Okuno, T.
Pathogenesis mediated by proviral host factors involved in translation and replication of plant positive-strand RNA viruses.
Current opinion in virology, 17:11-18 (2016)
Doi.org/10.1016/j.coviro.2015.11.004
Nakamura, S., Pourkheirandish, M., Morishige, H., Kubo, Y., Nakamura, M., Ichimura, K., Seo, S., Kanamori, H., Wu, J., Ando, T., Hensel, G., Sameri, M., Stein, N., Sato, K., Matsumoto, T., Yano, M., Komatsuda, T.
Mitogen-Activated Protein Kinase Kinase 3 Regulates Seed Dormancy in Barley.
Current biology : CB, 26(6):775-81 (2016)
Doi.org/10.1016/j.cub.2016.01.024
Higashi, A., Fujitani, Y., Nakayama, N., Tani, A., Ueki, S.
Selective growth promotion of bloom-forming raphidophyte Heterosigma akashiwo by a marine bacterial strain.
Harmful algae, 60:150-156 (2016)
Doi.org/10.1016/j.hal.2016.11.009
Tominaga, J., Mizutani, H., Horikawa, D., Nakahara, Y., Takami, T., Sakamoto, W., Sakamoto, A., Shimada, H.
Rice CYO1, an ortholog of Arabidopsis thaliana cotyledon chloroplast biogenesis factor AtCYO1, is expressed in leaves and involved in photosynthetic performance.
Journal of plant physiology, 207:78-83 (2016)
Doi.org/10.1016/j.jplph.2016.10.005
Sugimoto, M., Oono, Y., Kawahara, Y., Gusev, O., Maekawa, M., Matsumoto, T., Levinskikh, M., Sychev, V., Novikova, N., Grigoriev, A.
Gene expression of rice seeds surviving 13- and 20-month exposure to space environment.
Life sciences in space research, 11:10-17 (2016)
Doi.org/10.1016/j.lssr.2016.10.001
Hisano, H., Matsuura, T., Mori, I.C., Yamane, M., Sato, K.
Endogenous hormone levels affect the regeneration ability of callus derived from different organs in barley.
Plant physiology and biochemistry : PPB, 99:66-72 (2016)
Doi.org/10.1016/j.plaphy.2015.12.005
Chiba, S., Lin, Y., Kondo, H., Kanematsu, S., Suzuki, N.
A novel betapartitivirus RnPV6 from Rosellinia necatrix tolerates host RNA silencing but is interfered by its defective RNAs.
Virus research, 219:62-72 (2016)
Doi.org/10.1016/j.virusres.2015.10.017
Kondo, H., Hisano, S., Chiba, S., Maruyama, K., Andika, I.B., Toyoda, K., Fujimori, F., Suzuki, N.
Sequence and phylogenetic analyses of novel totivirus-like double-stranded RNAs from field-collected powdery mildew fungi.
Virus research, 213:353-364 (2016)
Doi.org/10.1016/j.virusres.2015.11.015
Sasaki, A., Nakamura, H., Suzuki, N., Kanematsu, S.
Characterization of a new megabirnavirus that confers hypovirulence with the aid of a co-infecting partitivirus to the host fungus, Rosellinia necatrix.
Virus research, 219:73-82 (2016)
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Xie, J., Havens, W.M., Lin, Y., Suzuki, N., Ghabrial, S.A.
The victorivirus Helminthosporium victoriae virus 190S is the primary cause of disease/hypovirulence in its natural host and a heterologous host.
Virus research, 213:238-245 (2016)
Doi.org/10.1016/j.virusres.2015.12.011
Xie, J., Havens, W.M., Lin, Y., Suzuki, N., Ghabrial, S.A.
Reprint of "The victorivirus Helminthosporium victoriae virus 190S is the primary cause of disease/hypovirulence in its natural host and a heterologous host".
Virus research, 219:100-107 (2016)
Doi.org/10.1016/j.virusres.2016.05.010
Kondo, H., Hisano, S., Chiba, S., Maruyama, K., Andika, I.B., Toyoda, K., Fujimori, F., Suzuki, N.
Reprint of "Sequence and phylogenetic analyses of novel totivirus-like double-stranded RNAs from field-collected powdery mildew fungi".
Virus research, 219:39-50 (2016)
Doi.org/10.1016/j.virusres.2016.05.011
Ikeda, H., Sakaguchi, S., Yakubov, V., Barkalov, V., Setoguchi, H.
Importance of demographic history for phylogeographic inference on the arctic-alpine plant Phyllodoce caerulea in East Asia.
Heredity, 116(2):232-8 (2016)
Doi.org/10.1038/hdy.2015.95
Sato, K., Yamane, M., Yamaji, N., Kanamori, H., Tagiri, A., Schwerdt, J.G., Fincher, G.B., Matsumoto, T., Takeda, K., Komatsuda, T.
Alanine aminotransferase controls seed dormancy in barley.
Nature communications, 7:11625 (2016)
Doi.org/10.1038/ncomms11625
Huang, X., Deng, F., Yamaji, N., Pinson, S.R.M., Fujii-Kashino, M., Danku, J., Douglas, A., Guerinot, M.L., Salt, D.E., Ma, J.F.
A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.
Nature communications, 7:12138 (2016)
Doi.org/10.1038/ncomms12138
Zhang, R., Hisano, S., Tani, A., Kondo, H., Kanematsu, S., Suzuki, N.
A capsidless ssRNA virus hosted by an unrelated dsRNA virus.
Nature microbiology, 1:15001 (2016)
Doi.org/10.1038/nmicrobiol.2015.1
Hayashi, S., Hirayama, T.
ahg12 is a dominant proteasome mutant that affects multiple regulatory systems for germination of Arabidopsis.
Scientific reports, 6:25351 (2016)
Doi.org/10.1038/srep25351
Shinya, T., Hojo, Y., Desaki, Y., Christeller, J.T., Okada, K., Shibuya, N., Galis, I.
Modulation of plant defense responses to herbivores by simultaneous recognition of different herbivore-associated elicitors in rice.
Scientific reports, 6:32537 (2016)
Doi.org/10.1038/srep32537
Takahagi, K., Uehara-Yamaguchi, Y., Yoshida, T., Sakurai, T., Shinozaki, K., Mochida, K., Saisho, D.
Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley.
Scientific reports, 6:33199 (2016)
Doi.org/10.1038/srep33199
Hisano, H., Sato, K.
Genomic regions responsible for amenability to Agrobacterium-mediated transformation in barley.
Scientific reports, 6:37505 (2016)
Doi.org/10.1038/srep37505
Saisho, D., Takumi, S., Matsuoka, Y.
Salt tolerance during germination and seedling growth of wild wheat Aegilops tauschii and its impact on the species range expansion.
Scientific reports, 6:38554 (2016)
Doi.org/10.1038/srep38554
Sharipova, G., Veselov, D., Kudoyarova, G., Fricke, W., Dodd, I.C., Katsuhara, M., Furuichi, T., Ivanov, I., Veselov, S.
Exogenous application of abscisic acid (ABA) increases root and cell hydraulic conductivity and abundance of some aquaporin isoforms in the ABA-deficient barley mutant Az34.
Annals of botany, 118(4):777-785 (2016)
Doi.org/10.1093/aob/mcw117
Sato, K., Tanaka, T., Shigenobu, S., Motoi, Y., Wu, J., Itoh, T.
Improvement of barley genome annotations by deciphering the Haruna Nijo genome.
DNA research : an international journal for rapid publication of reports on genes and genomes, 23(1):21-8 (2016)
Doi.org/10.1093/dnares/dsv033
Che, J., Yamaji, N., Shao, J.F., Ma, J.F., Shen, R.F.
Silicon decreases both uptake and root-to-shoot translocation of manganese in rice.
Journal of experimental botany, 67(5):1535-44 (2016)
Doi.org/10.1093/jxb/erv545
Sasaki, A., Yamaji, N., Ma, J.F.
Transporters involved in mineral nutrient uptake in rice.
Journal of experimental botany, 67(12):3645-53 (2016)
Doi.org/10.1093/jxb/erw060
Takagi, H., Ishiga, Y., Watanabe, S., Konishi, T., Egusa, M., Akiyoshi, N., Matsuura, T., Mori, I.C., Hirayama, T., Kaminaka, H., Shimada, H., Sakamoto, A.
Allantoin, a stress-related purine metabolite, can activate jasmonate signaling in a MYC2-regulated and abscisic acid-dependent manner.
Journal of experimental botany, 67(8):2519-2532 (2016)
Doi.org/10.1093/jxb/erw071
Yokosho, K., Yamaji, N., Ma, J.F.
OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.
Journal of experimental botany, 67(18):5485-5494 (2016)
Doi.org/10.1093/jxb/erw314
Yokosho, K., Yamaji, N., Fujii-Kashino, M., Ma, J.F.
Functional Analysis of a MATE Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a Lower Contribution to Al Tolerance in Rice.
Plant & cell physiology, 57(5):976-85 (2016)
Doi.org/10.1093/pcp/pcw026
Yokosho, K., Yamaji, N., Mitani-Ueno, N., Shen, R.F., Ma, J.F.
An Aluminum-Inducible IREG Gene is Required for Internal Detoxification of Aluminum in Buckwheat.
Plant & cell physiology, 57(6):1169-78 (2016)
Doi.org/10.1093/pcp/pcw065
Toda, Y., Wang, Y., Takahashi, A., Kawai, Y., Tada, Y., Yamaji, N., Feng Ma, J., Ashikari, M., Kinoshita, T.
Oryza sativa H+-ATPase (OSA) is Involved in the Regulation of Dumbbell-Shaped Guard Cells of Rice.
Plant & cell physiology, 57(6):1220-30 (2016)
Doi.org/10.1093/pcp/pcw070
Yin, Y., Adachi, Y., Nakamura, Y., Munemasa, S., Mori, I.C., Murata, Y.
Involvement of OST1 Protein Kinase and PYR/PYL/RCAR Receptors in Methyl Jasmonate-Induced Stomatal Closure in Arabidopsis Guard Cells.
Plant & cell physiology, 57(8):1779-90 (2016)
Doi.org/10.1093/pcp/pcw102
Sasaki, T., Tsuchiya, Y., Ariyoshi, M., Nakano, R., Ushijima, K., Kubo, Y., Mori, I.C., Higashiizumi, E., Galis, I., Yamamoto, Y.
Two Members of the Aluminum-Activated Malate Transporter Family, SlALMT4 and SlALMT5, are Expressed during Fruit Development, and the Overexpression of SlALMT5 Alters Organic Acid Contents in Seeds in Tomato (Solanum lycopersicum).
Plant & cell physiology, 57(11):2367-2379 (2016)
Doi.org/10.1093/pcp/pcw157
Mitani-Ueno, N., Yamaji, N., Ma, J.F.
High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.
Plant & cell physiology, 57(12):2510-2518 (2016)
Doi.org/10.1093/pcp/pcw163
Takanashi, K., Sasaki, T., Kan, T., Saida, Y., Sugiyama, A., Yamamoto, Y., Yazaki, K.
A Dicarboxylate Transporter, LjALMT4, Mainly Expressed in Nodules of Lotus japonicus.
Molecular plant-microbe interactions : MPMI, 29(7):584-92 (2016)
Doi.org/10.1094/MPMI-04-16-0071-R
Toyosawa, Y., Kawagoe, Y., Matsushima, R., Crofts, N., Ogawa, M., Fukuda, M., Kumamaru, T., Okazaki, Y., Kusano, M., Saito, K., Toyooka, K., Sato, M., Ai, Y., Jane, J., Nakamura, Y., Fujita, N.
Deficiency of Starch Synthase IIIa and IVb Alters Starch Granule Morphology from Polyhedral to Spherical in Rice Endosperm.
Plant physiology, 170(3):1255-70 (2016)
Doi.org/10.1104/pp.15.01232
Matsushima, R., Maekawa, M., Kusano, M., Tomita, K., Kondo, H., Nishimura, H., Crofts, N., Fujita, N., Sakamoto, W.
Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm.
Plant physiology, 170(3):1445-59 (2016)
Doi.org/10.1104/pp.15.01811
Jost, M., Taketa, S., Mascher, M., Himmelbach, A., Yuo, T., Shahinnia, F., Rutten, T., Druka, A., Schmutzer, T., Steuernagel, B., Beier, S., Taudien, S., Scholz, U., Morgante, M., Waugh, R., Stein, N.
A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence.
Plant physiology, 171(2):1113-27 (2016)
Doi.org/10.1104/pp.16.00124
Nishimura, K., Kato, Y., Sakamoto, W.
Chloroplast Proteases: Updates on Proteolysis within and across Suborganellar Compartments.
Plant physiology, 171(4):2280-93 (2016)
Doi.org/10.1104/pp.16.00330
Zhang, L., Kondo, H., Kamikubo, H., Kataoka, M., Sakamoto, W.
VIPP1 Has a Disordered C-Terminal Tail Necessary for Protecting Photosynthetic Membranes against Stress.
Plant physiology, 171(3):1983-95 (2016)
Doi.org/10.1104/pp.16.00532
Wu, D., Yamaji, N., Yamane, M., Kashino-Fujii, M., Sato, K., Feng Ma, J.
The HvNramp5 Transporter Mediates Uptake of Cadmium and Manganese, But Not Iron.
Plant physiology, 172(3):1899-1910 (2016)
Doi.org/10.1104/pp.16.01189
Yokosho, K., Yamaji, N., Fujii-Kashino, M., Ma, J.F.
Retrotransposon-Mediated Aluminum Tolerance through Enhanced Expression of the Citrate Transporter OsFRDL4.
Plant physiology, 172(4):2327-2336 (2016)
Doi.org/10.1104/pp.16.01214
Tanabe, K., Hojo, Y., Shinya, T., Galis, I.
Molecular evidence for biochemical diversification of phenolamide biosynthesis in rice plants.
Journal of integrative plant biology, 58(11):903-913 (2016)
Doi.org/10.1111/jipb.12480
Alamgir, K.M., Hojo, Y., Christeller, J.T., Fukumoto, K., Isshiki, R., Shinya, T., Baldwin, I.T., Galis, I.
Systematic analysis of rice (Oryza sativa) metabolic responses to herbivory.
Plant, cell & environment, 39(2):453-66 (2016)
Doi.org/10.1111/pce.12640
Che, J., Yamaji, N., Shen, R.F., Ma, J.F.
An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.
The Plant journal : for cell and molecular biology, 88(1):132-142 (2016)
Doi.org/10.1111/tpj.13237
Ogura, Y., Hayashi, T., Ueki, S.
Complete Genome Sequence of a Phycodnavirus, Heterosigma akashiwo Virus Strain 53.
Genome announcements, 4(6):10.1128/genomeA.01279-16 (2016)
Doi.org/10.1128/genomeA.01279-16
Ogura, Y., Nakayama, N., Hayashi, T., Ueki, S.
Mitochondrial Genome Sequences of Four Strains of the Bloom-Forming Raphidophyte Heterosigma akashiwo.
Genome announcements, 4(6):10.1128/genomeA.01288-16 (2016)
Doi.org/10.1128/genomeA.01288-16
Luque, D., Mata, C.P., Gonzalez-Camacho, F., Gonzalez, J.M., Gomez-Blanco, J., Alfonso, C., Rivas, G., Havens, W.M., Kanematsu, S., Suzuki, N., Ghabrial, S.A., Trus, B.L., Caston, J.R.
Heterodimers as the Structural Unit of the T=1 Capsid of the Fungal Double-Stranded RNA Rosellinia necatrix Quadrivirus 1.
Journal of virology, 90(24):11220-11230 (2016)
Doi.org/10.1128/JVI.01013-16
Hisano, H., Tsujimura, M., Yoshida, H., Terachi, T., Sato, K.
Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare).
BMC genomics, 17(1):824 (2016)
Doi.org/10.1186/s12864-016-3159-3
Suzuki, K., Yamaji, N., Costa, A., Okuma, E., Kobayashi, N.I., Kashiwagi, T., Katsuhara, M., Wang, C., Tanoi, K., Murata, Y., Schroeder, J.I., Ma, J.F., Horie, T.
OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.
BMC plant biology, 16:22 (2016)
Doi.org/10.1186/s12870-016-0709-4
Yoshikawa, T., Tanaka, S., Masumoto, Y., Nobori, N., Ishii, H., Hibara, K., Itoh, J., Tanisaka, T., Taketa, S.
Barley NARROW LEAFED DWARF1 encoding a WUSCHEL-RELATED HOMEOBOX 3 (WOX3) regulates the marginal development of lateral organs.
Breeding science, 66(3):416-24 (2016)
Doi.org/10.1270/jsbbs.16019
Gichuhi, E., Himi, E., Takahashi, H., Zhu, S., Doi, K., Tsugane, K., Maekawa, M.
Identification of QTLs for yield-related traits in RILs derived from the cross between pLIA-1 carrying Oryza longistaminata chromosome segments and Norin 18 in rice.
Breeding science, 66(5):720-733 (2016)
Doi.org/10.1270/jsbbs.16083
Azad, A.K., Ahmed, J., Alum, M.A., Hasan, M.M., Ishikawa, T., Sawa, Y., Katsuhara, M.
Genome-Wide Characterization of Major Intrinsic Proteins in Four Grass Plants and Their Non-Aqua Transport Selectivity Profiles with Comparative Perspective.
PloS one, 11(6):e0157735 (2016)
Doi.org/10.1371/journal.pone.0157735
Andika, I.B., Kondo, H., Sun, L.
Interplays between Soil-Borne Plant Viruses and RNA Silencing-Mediated Antiviral Defense in Roots.
Frontiers in microbiology, 7:1458 (2016)
Doi.org/10.3389/fmicb.2016.01458
Maruyama, F., Ueki, S.
Evolution and Phylogeny of Large DNA Viruses, Mimiviridae and Phycodnaviridae Including Newly Characterized Heterosigma akashiwo Virus.
Frontiers in microbiology, 7:1942 (2016)
Doi.org/10.3389/fmicb.2016.01942
Zhang, L., Kusaba, M., Tanaka, A., Sakamoto, W.
Protection of Chloroplast Membranes by VIPP1 Rescues Aberrant Seedling Development in Arabidopsis nyc1 Mutant.
Frontiers in plant science, 7:533 (2016)
Doi.org/10.3389/fpls.2016.00533
Li, H., Kondo, H., Kuhne, T., Shirako, Y.
Barley Yellow Mosaic Virus VPg Is the Determinant Protein for Breaking eIF4E-Mediated Recessive Resistance in Barley Plants.
Frontiers in plant science, 7:1449 (2016)
Doi.org/10.3389/fpls.2016.01449
Ezaki, B., Higashi, A., Nanba, N., Nishiuchi, T.
An S-adenosyl Methionine Synthetase (SAMS) Gene from Andropogon virginicus L. Confers Aluminum Stress Tolerance and Facilitates Epigenetic Gene Regulation in Arabidopsis thaliana.
Frontiers in plant science, 7:1627 (2016)
Doi.org/10.3389/fpls.2016.01627
Fukao, Y., Kobayashi, M., Zargar, S.M., Kurata, R., Fukui, R., Mori, I.C., Ogata, Y.
Quantitative Proteomic Analysis of the Response to Zinc, Magnesium, and Calcium Deficiency in Specific Cell Types of Arabidopsis Roots.
Proteomes, 4(1):10.3390/proteomes4010001 (2016)
Doi.org/10.3390/proteomes4010001
Ishiga, Y., Ishiga, T., Ikeda, Y., Matsuura, T., Mysore, K.S.
NADPH-dependent thioredoxin reductase C plays a role in nonhost disease resistance against Pseudomonas syringae pathogens by regulating chloroplast-generated reactive oxygen species.
PeerJ, 4:e1938 (2016)
Doi.org/10.7717/peerj.1938
2015
Ahmed, N., Tetlow, I.J., Nawaz, S., Iqbal, A., Mubin, M., Nawaz ul Rehman, M.S., Butt, A., Lightfoot, D.A., Maekawa, M.
Effect of high temperature on grain filling period, yield, amylose content and activity of starch biosynthesis enzymes in endosperm of basmati rice.
Journal of the science of food and agriculture, 95(11):2237-43 (2015)
Doi.org/10.1002/jsfa.6941
Sobhy, I.S., Erb, M., Turlings, T.C.J.
Plant strengtheners enhance parasitoid attraction to herbivore-damaged cotton via qualitative and quantitative changes in induced volatiles.
Pest management science, 71(5):686-93 (2015)
Doi.org/10.1002/ps.3821
Kondo, H., Chiba, S., Suzuki, N.
Detection and analysis of non-retroviral RNA virus-like elements in plant, fungal, and insect genomes.
Methods in molecular biology (Clifton, N.J.), 1236:73-88 (2015)
Doi.org/10.1007/978-1-4939-1743-3_7
Himi, E., Taketa, S.
Isolation of candidate genes for the barley Ant1 and wheat Rc genes controlling anthocyanin pigmentation in different vegetative tissues.
Molecular genetics and genomics : MGG, 290(4):1287-98 (2015)
Doi.org/10.1007/s00438-015-0991-0
Kondo, H., Takemoto, S., Maruyama, K., Chiba, S., Andika, I.B., Suzuki, N.
Cymbidium chlorotic mosaic virus, a new sobemovirus isolated from a spring orchid (Cymbidium goeringii) in Japan.
Archives of virology, 160(8):2099-104 (2015)
Doi.org/10.1007/s00705-015-2460-9
Ikeda, H., Yoneta, Y., Higashi, H., Eidesen, P.B., Barkalov, V., Yakubov, V., Brochmann, C., Setoguchi, H.
Persistent history of the bird-dispersed arctic-alpine plant Vaccinium vitis-idaea L. (Ericaceae) in Japan.
Journal of plant research, 128(3):437-44 (2015)
Doi.org/10.1007/s10265-015-0709-8
Kato, Y., Ozawa, S., Takahashi, Y., Sakamoto, W.
D1 fragmentation in photosystem II repair caused by photo-damage of a two-step model.
Photosynthesis research, 126(2-3):409-16 (2015)
Doi.org/10.1007/s11120-015-0144-7
Pourkheirandish, M., Hensel, G., Kilian, B., Senthil, N., Chen, G., Sameri, M., Azhaguvel, P., Sakuma, S., Dhanagond, S., Sharma, R., Mascher, M., Himmelbach, A., Gottwald, S., Nair, S.K., Tagiri, A., Yukuhiro, F., Nagamura, Y., Kanamori, H., Matsumoto, T., Willcox, G., Middleton, C.P., Wicker, T., Walther, A., Waugh, R., Fincher, G.B., Stein, N., Kumlehn, J., Sato, K., Komatsuda, T.
Evolution of the Grain Dispersal System in Barley.
Cell, 162(3):527-39 (2015)
Doi.org/10.1016/j.cell.2015.07.002
Mori, I.C., Arias-Barreiro, C.R., Koutsaftis, A., Ogo, A., Kawano, T., Yoshizuka, K., Inayat-Hussain, S.H., Aoyama, I.
Toxicity of tetramethylammonium hydroxide to aquatic organisms and its synergistic action with potassium iodide.
Chemosphere, 120:299-304 (2015)
Doi.org/10.1016/j.chemosphere.2014.07.011
Iimure, T., Kihara, M., Sato, K., Ogushi, K.
Purification of barley dimeric alpha-amylase inhibitor-1 (BDAI-1) and avenin-like protein-a (ALP) from beer and their impact on beer foam stability.
Food chemistry, 172:257-64 (2015)
Doi.org/10.1016/j.foodchem.2014.09.012
Chen, Z.C., Ma, J.F.
Improving nitrogen use efficiency in rice through enhancing root nitrate uptake mediated by a nitrate transporter, NRT1.1B.
Journal of genetics and genomics = Yi chuan xue bao, 42(9):463-5 (2015)
Doi.org/10.1016/j.jgg.2015.08.003
Belobrajdic, D.P., Jobling, S.A., Morell, M.K., Taketa, S., Bird, A.R.
Wholegrain barley beta-glucan fermentation does not improve glucose tolerance in rats fed a high-fat diet.
Nutrition research (New York, N.Y.), 35(2):162-8 (2015)
Doi.org/10.1016/j.nutres.2014.12.006
Shinya, T., Nakagawa, T., Kaku, H., Shibuya, N.
Chitin-mediated plant-fungal interactions: catching, hiding and handshaking.
Current opinion in plant biology, 26:64-71 (2015)
Doi.org/10.1016/j.pbi.2015.05.032
Koua, F.H.M., Kimbara, K., Tani, A.
Bacterial-biota dynamics of eight bryophyte species from different ecosystems.
Saudi journal of biological sciences, 22(2):204-10 (2015)
Doi.org/10.1016/j.sjbs.2014.07.009
Eusebio-Cope, A., Sun, L., Tanaka, T., Chiba, S., Kasahara, S., Suzuki, N.
The chestnut blight fungus for studies on virus/host and virus/virus interactions: from a natural to a model host.
Virology, 477:164-175 (2015)
Doi.org/10.1016/j.virol.2014.09.024
Ghabrial, S.A., Caston, J.R., Jiang, D., Nibert, M.L., Suzuki, N.
50-plus years of fungal viruses.
Virology, 479-480:356-68 (2015)
Doi.org/10.1016/j.virol.2015.02.034
Deng, W., Casao, M.C., Wang, P., Sato, K., Hayes, P.M., Finnegan, E.J., Trevaskis, B.
Direct links between the vernalization response and other key traits of cereal crops.
Nature communications, 6:5882 (2015)
Doi.org/10.1038/ncomms6882
Miyaji, T., Kuromori, T., Takeuchi, Y., Yamaji, N., Yokosho, K., Shimazawa, A., Sugimoto, E., Omote, H., Ma, J.F., Shinozaki, K., Moriyama, Y.
AtPHT4;4 is a chloroplast-localized ascorbate transporter in Arabidopsis.
Nature communications, 6:5928 (2015)
Doi.org/10.1038/ncomms6928
Ueno, D., Sasaki, A., Yamaji, N., Miyaji, T., Fujii, Y., Takemoto, Y., Moriyama, S., Che, J., Moriyama, Y., Iwasaki, K., Ma, J.F.
A polarly localized transporter for efficient manganese uptake in rice.
Nature plants, 1:15170 (2015)
Doi.org/10.1038/nplants.2015.170
Oikawa, K., Matsunaga, S., Mano, S., Kondo, M., Yamada, K., Hayashi, M., Kagawa, T., Kadota, A., Sakamoto, W., Higashi, S., Watanabe, M., Mitsui, T., Shigemasa, A., Iino, T., Hosokawa, Y., Nishimura, M.
Physical interaction between peroxisomes and chloroplasts elucidated by in situ laser analysis.
Nature plants, 1(4):15035 (2015)
Doi.org/10.1038/nplants.2015.35
Takatani, S., Hirayama, T., Hashimoto, T., Takahashi, T., Motose, H.
Abscisic acid induces ectopic outgrowth in epidermal cells through cortical microtubule reorganization in Arabidopsis thaliana.
Scientific reports, 5:11364 (2015)
Doi.org/10.1038/srep11364
Hayashi-Tsugane, M., Maekawa, M., Tsugane, K.
A gain-of-function Bushy dwarf tiller 1 mutation in rice microRNA gene miR156d caused by insertion of the DNA transposon nDart1.
Scientific reports, 5:14357 (2015)
Doi.org/10.1038/srep14357
Yamaji, N., Sakurai, G., Mitani-Ueno, N., Ma, J.F.
Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.
Proceedings of the National Academy of Sciences of the United States of America, 112(36):11401-6 (2015)
Doi.org/10.1073/pnas.1508987112
Chiba, S., Suzuki, N.
Highly activated RNA silencing via strong induction of dicer by one virus can interfere with the replication of an unrelated virus.
Proceedings of the National Academy of Sciences of the United States of America, 112(35):E4911-8 (2015)
Doi.org/10.1073/pnas.1509151112
Tanaka, S., Kihara, M., Sugimoto, M.
Structure and molecular characterization of barley nudix hydrolase genes.
Bioscience, biotechnology, and biochemistry, 79(3):394-401 (2015)
Doi.org/10.1080/09168451.2014.978259
Andika, I.B., Maruyama, K., Sun, L., Kondo, H., Tamada, T., Suzuki, N.
Different Dicer-like protein components required for intracellular and systemic antiviral silencing in Arabidopsis thaliana.
Plant signaling & behavior, 10(8):e1039214 (2015)
Doi.org/10.1080/15592324.2015.1039214
Lu, Y., Sasaki, Y., Li, X., Mori, I.C., Matsuura, T., Hirayama, T., Sato, T., Yamaguchi, J.
ABI1 regulates carbon/nitrogen-nutrient signal transduction independent of ABA biosynthesis and canonical ABA signalling pathways in Arabidopsis.
Journal of experimental botany, 66(9):2763-71 (2015)
Doi.org/10.1093/jxb/erv086
Chen, Y., Moore, K.L., Miller, A.J., McGrath, S.P., Ma, J.F., Zhao, F.
The role of nodes in arsenic storage and distribution in rice.
Journal of experimental botany, 66(13):3717-24 (2015)
Doi.org/10.1093/jxb/erv164
Lu, Y., Sasaki, Y., Li, X., Mori, I.C., Matsuura, T., Hirayama, T., Sato, T., Yamaguchi, J.
ABI1 regulates carbon/nitrogen-nutrient signal transduction independent of ABA biosynthesis and canonical ABA signalling pathways in Arabidopsis.
Journal of experimental botany, 66(15):4851 (2015)
Doi.org/10.1093/jxb/erv264
Eusebio-Cope, A., Suzuki, N.
Mycoreovirus genome rearrangements associated with RNA silencing deficiency.
Nucleic acids research, 43(7):3802-13 (2015)
Doi.org/10.1093/nar/gkv239
Kaneko, T., Horie, T., Nakahara, Y., Tsuji, N., Shibasaka, M., Katsuhara, M.
Dynamic regulation of the root hydraulic conductivity of barley plants in response to salinity/osmotic stress.
Plant & cell physiology, 56(5):875-82 (2015)
Doi.org/10.1093/pcp/pcv013
Sakurai, G., Satake, A., Yamaji, N., Mitani-Ueno, N., Yokozawa, M., Feugier, F.G., Ma, J.F.
In silico simulation modeling reveals the importance of the Casparian strip for efficient silicon uptake in rice roots.
Plant & cell physiology, 56(4):631-9 (2015)
Doi.org/10.1093/pcp/pcv017
Kamau, P.K., Sano, S., Takami, T., Matsushima, R., Maekawa, M., Sakamoto, W.
A Mutation in GIANT CHLOROPLAST Encoding a PARC6 Homolog Affects Spikelet Fertility in Rice.
Plant & cell physiology, 56(5):977-91 (2015)
Doi.org/10.1093/pcp/pcv024
Ye, W., Adachi, Y., Munemasa, S., Nakamura, Y., Mori, I.C., Murata, Y.
Open Stomata 1 Kinase is Essential for Yeast Elicitor-Induced Stomatal Closure in Arabidopsis.
Plant & cell physiology, 56(6):1239-48 (2015)
Doi.org/10.1093/pcp/pcv051
Utsugi, S., Shibasaka, M., Maekawa, M., Katsuhara, M.
Control of the Water Transport Activity of Barley HvTIP3;1 Specifically Expressed in Seeds.
Plant & cell physiology, 56(9):1831-40 (2015)
Doi.org/10.1093/pcp/pcv104
Matsushima, R., Maekawa, M., Sakamoto, W.
Geometrical Formation of Compound Starch Grains in Rice Implements Voronoi Diagram.
Plant & cell physiology, 56(11):2150-7 (2015)
Doi.org/10.1093/pcp/pcv123
Cuesta-Marcos, A., Munoz-Amatriain, M., Filichkin, T., Karsai, I., Trevaskis, B., Yasuda, S., Hayes, P., Sato, K.
The Relationships between Development and Low Temperature Tolerance in Barley Near Isogenic Lines Differing for Flowering Behavior.
Plant & cell physiology, 56(12):2312-24 (2015)
Doi.org/10.1093/pcp/pcv147
Miyazaki, N., Salaipeth, L., Kanematsu, S., Iwasaki, K., Suzuki, N.
Megabirnavirus structure reveals a putative 120-subunit capsid formed by asymmetrical dimers with distinctive large protrusions.
The Journal of general virology, 96(8):2435-2441 (2015)
Doi.org/10.1099/vir.0.000182
Chen, J., Wang, Y., Wang, F., Yang, J., Gao, M., Li, C., Liu, Y., Liu, Y., Yamaji, N., Ma, J.F., Paz-Ares, J., Nussaume, L., Zhang, S., Yi, K., Wu, Z., Wu, P.
The rice CK2 kinase regulates trafficking of phosphate transporters in response to phosphate levels.
The Plant cell, 27(3):711-23 (2015)
Doi.org/10.1105/tpc.114.135335
Wang, H., Chen, R.F., Iwashita, T., Shen, R.F., Ma, J.F.
Physiological characterization of aluminum tolerance and accumulation in tartary and wild buckwheat.
The New phytologist, 205(1):273-9 (2015)
Doi.org/10.1111/nph.13011
Wu, D., Sato, K., Ma, J.F.
Genome-wide association mapping of cadmium accumulation in different organs of barley.
The New phytologist, 208(3):817-29 (2015)
Doi.org/10.1111/nph.13512
Wang, W., Zhao, X.Q., Chen, R.F., Dong, X.Y., Lan, P., Ma, J.F., Shen, R.F.
Altered cell wall properties are responsible for ammonium-reduced aluminium accumulation in rice roots.
Plant, cell & environment, 38(7):1382-90 (2015)
Doi.org/10.1111/pce.12490
Khokon, M.A.R., Salam, M.A., Jammes, F., Ye, W., Hossain, M.A., Uraji, M., Nakamura, Y., Mori, I.C., Kwak, J.M., Murata, Y.
Two guard cell mitogen-activated protein kinases, MPK9 and MPK12, function in methyl jasmonate-induced stomatal closure in Arabidopsis thaliana.
Plant biology (Stuttgart, Germany), 17(5):946-52 (2015)
Doi.org/10.1111/plb.12321
Andika, I.B., Maruyama, K., Sun, L., Kondo, H., Tamada, T., Suzuki, N.
Differential contributions of plant Dicer-like proteins to antiviral defences against potato virus X in leaves and roots.
The Plant journal : for cell and molecular biology, 81(5):781-93 (2015)
Doi.org/10.1111/tpj.12770
Inaba, S., Kurata, R., Kobayashi, M., Yamagishi, Y., Mori, I., Ogata, Y., Fukao, Y.
Identification of putative target genes of bZIP19, a transcription factor essential for Arabidopsis adaptation to Zn deficiency in roots.
The Plant journal : for cell and molecular biology, 84(2):323-34 (2015)
Doi.org/10.1111/tpj.12996
Sasaki, A., Yamaji, N., Mitani-Ueno, N., Kashino, M., Ma, J.F.
A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.
The Plant journal : for cell and molecular biology, 84(2):374-84 (2015)
Doi.org/10.1111/tpj.13005
Tani, A., Ogura, Y., Hayashi, T., Kimbara, K.
Complete Genome Sequence of Methylobacterium aquaticum Strain 22A, Isolated from Racomitrium japonicum Moss.
Genome announcements, 3(2):10.1128/genomeA.00266-15 (2015)
Doi.org/10.1128/genomeA.00266-15
Himi, E., Taketa, S.
Barley Ant17, encoding flavanone 3-hydroxylase (F3H), is a promising target locus for attaining anthocyanin/proanthocyanidin-free plants without pleiotropic reduction of grain dormancy.
Genome, 58(1):43-53 (2015)
Doi.org/10.1139/gen-2014-0189
Kobayashi, F., Wu, J., Kanamori, H., Tanaka, T., Katagiri, S., Karasawa, W., Kaneko, S., Watanabe, S., Sakaguchi, T., Hanawa, Y., Fujisawa, H., Kurita, K., Abe, C., Iehisa, J.C.M., Ohno, R., Safar, J., Simkova, H., Mukai, Y., Hamada, M., Saito, M., Ishikawa, G., Katayose, Y., Endo, T.R., Takumi, S., Nakamura, T., Sato, K., Ogihara, Y., Hayakawa, K., Dolezel, J., Nasuda, S., Matsumoto, T., Handa, H.
A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B.
BMC genomics, 16(1):595 (2015)
Doi.org/10.1186/s12864-015-1803-y
Meldau, S., Woldemariam, M.G., Fatangare, A., Svatos, A., Galis, I.
Using 2-deoxy-2-[18F]fluoro-D-glucose ([18F]FDG) to study carbon allocation in plants after herbivore attack.
BMC research notes, 8:45 (2015)
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Tsukahara, K., Sawada, H., Kohno, Y., Matsuura, T., Mori, I.C., Terao, T., Ioki, M., Tamaoki, M.
Ozone-Induced Rice Grain Yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.
PloS one, 10(4):e0123308 (2015)
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Tani, A., Sahin, N., Fujitani, Y., Kato, A., Sato, K., Kimbara, K.
Methylobacterium Species Promoting Rice and Barley Growth and Interaction Specificity Revealed with Whole-Cell Matrix-Assisted Laser Desorption/Ionization-Time-of-Flight Mass Spectrometry (MALDI-TOF/MS) Analysis.
PloS one, 10(6):e0129509 (2015)
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Rikiishi, K., Matsuura, T., Ikeda, Y., Maekawa, M.
Light Inhibition of Shoot Regeneration Is Regulated by Endogenous Abscisic Acid Level in Calli Derived from Immature Barley Embryos.
PloS one, 10(12):e0145242 (2015)
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Suzuki, N., Sasaya, T., Choi, I.
Editorial: Viruses threatening stable production of cereal crops.
Frontiers in microbiology, 6:470 (2015)
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Alamgir, K.M., Masuda, S., Fujitani, Y., Fukuda, F., Tani, A.
Production of ergothioneine by Methylobacterium species.
Frontiers in microbiology, 6:1185 (2015)
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Matsunaga, W., Ohama, N., Tanabe, N., Masuta, Y., Masuda, S., Mitani, N., Yamaguchi-Shinozaki, K., Ma, J.F., Kato, A., Ito, H.
A small RNA mediated regulation of a stress-activated retrotransposon and the tissue specific transposition during the reproductive period in Arabidopsis.
Frontiers in plant science, 6:48 (2015)
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Mochida, K., Saisho, D., Hirayama, T.
Crop improvement using life cycle datasets acquired under field conditions.
Frontiers in plant science, 6:740 (2015)
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Nagaki, K., Tanaka, K., Yamaji, N., Kobayashi, H., Murata, M.
Sunflower centromeres consist of a centromere-specific LINE and a chromosome-specific tandem repeat.
Frontiers in plant science, 6:912 (2015)
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Nakahara, Y., Sawabe, S., Kainuma, K., Katsuhara, M., Shibasaka, M., Suzuki, M., Yamamoto, K., Oguri, S., Sakamoto, H.
Yeast functional screen to identify genes conferring salt stress tolerance in Salicornia europaea.
Frontiers in plant science, 6:920 (2015)
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Ooi, L., Heng, L.Y., Mori, I.C.
A high-throughput oxidative stress biosensor based on Escherichia coli roGFP2 cells immobilized in a k-carrageenan matrix.
Sensors (Basel, Switzerland), 15(2):2354-68 (2015)
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2014
Kondo, H., Maeda, T., Gara, I.W., Chiba, S., Maruyama, K., Tamada, T., Suzuki, N.
Complete genome sequence of Habenaria mosaic virus, a new potyvirus infecting a terrestrial orchid (Habenaria radiata) in Japan.
Archives of virology, 159(1):163-6 (2014)
Doi.org/10.1007/s00705-013-1784-6
Yamashita, J., Enomoto, T., Yamada, M., Ono, T., Hanafusa, T., Nagamatsu, T., Sonoda, S., Yamamoto, Y.
Estimation of soil-to-plant transfer factors of radiocesium in 99 wild plant species grown in arable lands 1 year after the Fukushima 1 Nuclear Power Plant accident.
Journal of plant research, 127(1):11-22 (2014)
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Katsuhara, M., Tsuji, N., Shibasaka, M., Panda, S.K.
Osmotic stress decreases PIP aquaporin transcripts in barley roots but H2O2 is not involved in this process.
Journal of plant research, 127(6):787-92 (2014)
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Murata, M.
Minichromosomes and artificial chromosomes in Arabidopsis.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 22(2):167-78 (2014)
Doi.org/10.1007/s10577-014-9421-0
Tek, A.L., Kashihara, K., Murata, M., Nagaki, K.
Identification of the centromere-specific histone H3 variant in Lotus japonicus.
Gene, 538(1):8-11 (2014)
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Sonoda, S., Shi, X., Song, D., Liang, P., Gao, X., Zhang, Y., Li, J., Liu, Y., Li, M., Matsumura, M., Sanada-Morimura, S., Minakuchi, C., Tanaka, T., Miyata, T.
Duplication of acetylcholinesterase gene in diamondback moth strains with different sensitivities to acephate.
Insect biochemistry and molecular biology, 48:83-90 (2014)
Doi.org/10.1016/j.ibmb.2014.02.008
Iehisa, J.C.M., Matsuura, T., Mori, I.C., Takumi, S.
Identification of quantitative trait locus for abscisic acid responsiveness on chromosome 5A and association with dehydration tolerance in common wheat seedlings.
Journal of plant physiology, 171(2):25-34 (2014)
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Iehisa, J.C.M., Matsuura, T., Mori, I.C., Yokota, H., Kobayashi, F., Takumi, S.
Identification of quantitative trait loci for abscisic acid responsiveness in the D-genome of hexaploid wheat.
Journal of plant physiology, 171(10):830-41 (2014)
Doi.org/10.1016/j.jplph.2014.02.003
Bao, W.X., Kataoka, Y., Kohara, Y., Sonoda, S.
Genomic analyses of sodium channel alpha-subunit genes from strains of melon thrips, Thrips palmi, with different sensitivities to cypermethrin.
Pesticide biochemistry and physiology, 108:80-5 (2014)
Doi.org/10.1016/j.pestbp.2013.12.009
Bao, W.X., Narai, Y., Nakano, A., Kaneda, T., Murai, T., Sonoda, S.
Spinosad resistance of melon thrips, Thrips palmi, is conferred by G275E mutation in alpha6 subunit of nicotinic acetylcholine receptor and cytochrome P450 detoxification.
Pesticide biochemistry and physiology, 112:51-5 (2014)
Doi.org/10.1016/j.pestbp.2014.04.013
Christeller, J.T., Galis, I.
alpha-linolenic acid concentration and not wounding per se is the key regulator of octadecanoid (oxylipin) pathway activity in rice (Oryza sativa L.) leaves.
Plant physiology and biochemistry : PPB, 83:117-25 (2014)
Doi.org/10.1016/j.plaphy.2014.07.013
Kanematsu, S., Shimizu, T., Salaipeth, L., Yaegashi, H., Sasaki, A., Ito, T., Suzuki, N.
Genome rearrangement of a mycovirus Rosellinia necatrix megabirnavirus 1 affecting its ability to attenuate virulence of the host fungus.
Virology, 450-451:308-15 (2014)
Doi.org/10.1016/j.virol.2013.12.002
Kondo, H., Maruyama, K., Chiba, S., Andika, I.B., Suzuki, N.
Transcriptional mapping of the messenger and leader RNAs of orchid fleck virus, a bisegmented negative-strand RNA virus.
Virology, 452-453:166-74 (2014)
Doi.org/10.1016/j.virol.2014.01.007
Ishikawa, N., Ikeda, H., Yi, T., Takabe-Ito, E., Okada, H., Tsukaya, H.
Lineage diversification and hybridization in the Cayratia japonica-Cayratia tenuifolia species complex.
Molecular phylogenetics and evolution, 75:227-38 (2014)
Doi.org/10.1016/j.ympev.2014.01.027
Sugimoto, K., Matsui, K., Iijima, Y., Akakabe, Y., Muramoto, S., Ozawa, R., Uefune, M., Sasaki, R., Alamgir, K.M., Akitake, S., Nobuke, T., Galis, I., Aoki, K., Shibata, D., Takabayashi, J.
Intake and transformation to a glycoside of (Z)-3-hexenol from infested neighbors reveals a mode of plant odor reception and defense.
Proceedings of the National Academy of Sciences of the United States of America, 111(19):7144-9 (2014)
Doi.org/10.1073/pnas.1320660111
Song, W., Yamaki, T., Yamaji, N., Ko, D., Jung, K., Fujii-Kashino, M., An, G., Martinoia, E., Lee, Y., Ma, J.F.
A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain.
Proceedings of the National Academy of Sciences of the United States of America, 111(44):15699-704 (2014)
Doi.org/10.1073/pnas.1414968111
Sakamoto, W., Takami, T.
Nucleases in higher plants and their possible involvement in DNA degradation during leaf senescence.
Journal of experimental botany, 65(14):3835-43 (2014)
Doi.org/10.1093/jxb/eru091
Xia, J., Yamaji, N., Che, J., Shen, R.F., Ma, J.F.
Differential expression of Nrat1 is responsible for Al-tolerance QTL on chromosome 2 in rice.
Journal of experimental botany, 65(15):4297-304 (2014)
Doi.org/10.1093/jxb/eru201
Asai, H., Abe, N., Matsushima, R., Crofts, N., Oitome, N.F., Nakamura, Y., Fujita, N.
Deficiencies in both starch synthase IIIa and branching enzyme IIb lead to a significant increase in amylose in SSIIa-inactive japonica rice seeds.
Journal of experimental botany, 65(18):5497-507 (2014)
Doi.org/10.1093/jxb/eru310
Sasaki, A., Yamaji, N., Ma, J.F.
Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.
Journal of experimental botany, 65(20):6013-21 (2014)
Doi.org/10.1093/jxb/eru340
Mori, I.C., Rhee, J., Shibasaka, M., Sasano, S., Kaneko, T., Horie, T., Katsuhara, M.
CO2 transport by PIP2 aquaporins of barley.
Plant & cell physiology, 55(2):251-7 (2014)
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Yokosho, K., Yamaji, N., Ma, J.F.
Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
Plant & cell physiology, 55(12):2077-91 (2014)
Doi.org/10.1093/pcp/pcu135
Sasaki, T., Tsuchiya, Y., Ariyoshi, M., Ryan, P.R., Furuichi, T., Yamamoto, Y.
A domain-based approach for analyzing the function of aluminum-activated malate transporters from wheat (Triticum aestivum) and Arabidopsis thaliana in Xenopus oocytes.
Plant & cell physiology, 55(12):2126-38 (2014)
Doi.org/10.1093/pcp/pcu143
Salaipeth, L., Chiba, S., Eusebio-Cope, A., Kanematsu, S., Suzuki, N.
Biological properties and expression strategy of rosellinia necatrix megabirnavirus 1 analysed in an experimental host, Cryphonectria parasitica.
The Journal of general virology, 95(Pt 3):740-750 (2014)
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Matsushima, R., Maekawa, M., Kusano, M., Kondo, H., Fujita, N., Kawagoe, Y., Sakamoto, W.
Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm.
Plant physiology, 164(2):623-36 (2014)
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Borg, M., Rutley, N., Kagale, S., Hamamura, Y., Gherghinoiu, M., Kumar, S., Sari, U., Esparza-Franco, M.A., Sakamoto, W., Rozwadowski, K., Higashiyama, T., Twell, D.
An EAR-Dependent Regulatory Module Promotes Male Germ Cell Division and Sperm Fertility in Arabidopsis.
The Plant cell, 26(5):2098-2113 (2014)
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Isshiki, R., Galis, I., Tanakamaru, S.
Farinose flavonoids are associated with high freezing tolerance in fairy primrose (Primula malacoides) plants.
Journal of integrative plant biology, 56(2):181-8 (2014)
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Mitani-Ueno, N., Ogai, H., Yamaji, N., Ma, J.F.
Physiological and molecular characterization of Si uptake in wild rice species.
Physiologia plantarum, 151(3):200-7 (2014)
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Xia, J., Yamaji, N., Che, J., Shen, R.F., Ma, J.F.
Normal root elongation requires arginine produced by argininosuccinate lyase in rice.
The Plant journal : for cell and molecular biology, 78(2):215-26 (2014)
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Shinya, T., Yamaguchi, K., Desaki, Y., Yamada, K., Narisawa, T., Kobayashi, Y., Maeda, K., Suzuki, M., Tanimoto, T., Takeda, J., Nakashima, M., Funama, R., Narusaka, M., Narusaka, Y., Kaku, H., Kawasaki, T., Shibuya, N.
Selective regulation of the chitin-induced defense response by the Arabidopsis receptor-like cytoplasmic kinase PBL27.
The Plant journal : for cell and molecular biology, 79(1):56-66 (2014)
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Kato, Y., Sakamoto, W.
Phosphorylation of photosystem II core proteins prevents undesirable cleavage of D1 and contributes to the fine-tuned repair of photosystem II.
The Plant journal : for cell and molecular biology, 79(2):312-21 (2014)
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Sugimoto, M., Oono, Y., Gusev, O., Matsumoto, T., Yazawa, T., Levinskikh, M.A., Sychev, V.N., Bingham, G.E., Wheeler, R., Hummerick, M.
Genome-wide expression analysis of reactive oxygen species gene network in Mizuna plants grown in long-term spaceflight.
BMC plant biology, 14:4 (2014)
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Sbei, H., Sato, K., Shehzad, T., Harrabi, M., Okuno, K.
Detection of QTLs for salt tolerance in Asian barley (Hordeum vulgare L.) by association analysis with SNP markers.
Breeding science, 64(4):378-88 (2014)
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Turuspekov, Y., Abugalieva, S., Ermekbayev, K., Sato, K.
Genetic characterization of wild barley populations (Hordeum vulgare ssp. spontaneum) from Kazakhstan based on genome wide SNP analysis.
Breeding science, 64(4):399-403 (2014)
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Kiba, A., Galis, I., Hojo, Y., Ohnishi, K., Yoshioka, H., Hikichi, Y.
SEC14 phospholipid transfer protein is involved in lipid signaling-mediated plant immune responses in Nicotiana benthamiana.
PloS one, 9(5):e98150 (2014)
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Rikiishi, K., Maekawa, M.
Seed maturation regulators are related to the control of seed dormancy in wheat (Triticum aestivum L.).
PloS one, 9(9):e107618 (2014)
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Mitsunami, T., Nishihara, M., Galis, I., Alamgir, K.M., Hojo, Y., Fujita, K., Sasaki, N., Nemoto, K., Sawasaki, T., Arimura, G.
Overexpression of the PAP1 transcription factor reveals a complex regulation of flavonoid and phenylpropanoid metabolism in Nicotiana tabacum plants attacked by Spodoptera litura.
PloS one, 9(9):e108849 (2014)
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Suzuki, N.
[Cryphonectria parasitica as a host of fungal viruses: a tool useful to unravel the mycovirus world].
Uirusu, 64(1):11-24 (2014)
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Chiba, S., Suzuki, N.
[Diverse double-stranded RNA viruses infecting fungi].
Uirusu, 64(2):225-38 (2014)
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Zhang, R., Liu, S., Chiba, S., Kondo, H., Kanematsu, S., Suzuki, N.
A novel single-stranded RNA virus isolated from a phytopathogenic filamentous fungus, Rosellinia necatrix, with similarity to hypo-like viruses.
Frontiers in microbiology, 5:360 (2014)
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Hirayama, T.
A unique system for regulating mitochondrial mRNA poly(A) status and stability in plants.
Plant signaling & behavior, 9(10):e973809 (2014)
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Shibata, M., Oikawa, K., Yoshimoto, K., Goto-Yamada, S., Mano, S., Yamada, K., Kondo, M., Hayashi, M., Sakamoto, W., Ohsumi, Y., Nishimura, M.
Plant autophagy is responsible for peroxisomal transition and plays an important role in the maintenance of peroxisomal quality.
Autophagy, 10(5):936-7 (2014)
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Ueki, S., Citovsky, V.
Plasmodesmata-associated proteins: can we see the whole elephant?.
Plant signaling & behavior, 9(2):e27899 (2014)
Doi.org/10.4161/psb.27899
Xia, J., Yamaji, N., Ma, J.F.
An appropriate concentration of arginine is required for normal root growth in rice.
Plant signaling & behavior, 9(4):e28717 (2014)
Doi.org/10.4161/psb.28717
2013
Ueki, S., Magori, S., Lacroix, B., Citovsky, V.
Transient gene expression in epidermal cells of plant leaves by biolistic DNA delivery.
Methods in molecular biology (Clifton, N.J.), 940:17-26 (2013)
Doi.org/10.1007/978-1-62703-110-3_2
Lin, Y., Hisano, S., Yaegashi, H., Kanematsu, S., Suzuki, N.
A second quadrivirus strain from the phytopathogenic filamentous fungus Rosellinia necatrix.
Archives of virology, 158(5):1093-8 (2013)
Doi.org/10.1007/s00705-012-1580-8
Shibata, F., Nagaki, K., Yokota, E., Murata, M.
Tobacco karyotyping by accurate centromere identification and novel repetitive DNA localization.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 21(4):375-81 (2013)
Doi.org/10.1007/s10577-013-9363-y
Sanchez, Z., Tani, A., Suzuki, N., Kariyama, R., Kumon, H., Kimbara, K.
Assessment of change in biofilm architecture by nutrient concentration using a multichannel microdevice flow system.
Journal of bioscience and bioengineering, 115(3):326-31 (2013)
Doi.org/10.1016/j.jbiosc.2012.09.018
Kariya, K., Demiral, T., Sasaki, T., Tsuchiya, Y., Turkan, I., Sano, T., Hasezawa, S., Yamamoto, Y.
A novel mechanism of aluminum-induced cell death involving vacuolar processing enzyme and vacuolar collapse in tobacco cell line BY-2.
Journal of inorganic biochemistry, 128:196-201 (2013)
Doi.org/10.1016/j.jinorgbio.2013.07.001
Kondo, H., Hirano, S., Chiba, S., Andika, I.B., Hirai, M., Maeda, T., Tamada, T.
Characterization of burdock mottle virus, a novel member of the genus Benyvirus, and the identification of benyvirus-related sequences in the plant and insect genomes.
Virus research, 177(1):75-86 (2013)
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Hirayama, T., Matsuura, T., Ushiyama, S., Narusaka, M., Kurihara, Y., Yasuda, M., Ohtani, M., Seki, M., Demura, T., Nakashita, H., Narusaka, Y., Hayashi, S.
A poly(A)-specific ribonuclease directly regulates the poly(A) status of mitochondrial mRNA in Arabidopsis.
Nature communications, 4:2247 (2013)
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Yamaji, N., Sasaki, A., Xia, J.X., Yokosho, K., Ma, J.F.
A node-based switch for preferential distribution of manganese in rice.
Nature communications, 4:2442 (2013)
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Tani, A., Sahin, N.
Methylobacterium haplocladii sp. nov. and Methylobacterium brachythecii sp. nov., isolated from bryophytes.
International journal of systematic and evolutionary microbiology, 63(Pt 9):3287-3292 (2013)
Doi.org/10.1099/ijs.0.048215-0
Hiraguri, A., Ueki, S., Kondo, H., Nomiyama, K., Shimizu, T., Ichiki-Uehara, T., Omura, T., Sasaki, N., Nyunoya, H., Sasaya, T.
Identification of a movement protein of Mirafiori lettuce big-vein ophiovirus.
The Journal of general virology, 94(Pt 5):1145-1150 (2013)
Doi.org/10.1099/vir.0.050005-0
Sun, L., Jing, B., Andika, I.B., Hu, Y., Sun, B., Xiang, R., Kondo, H., Chen, J.
Nucleo-cytoplasmic shuttling of VPg encoded by Wheat yellow mosaic virus requires association with the coat protein.
The Journal of general virology, 94(Pt 12):2790-2802 (2013)
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Yamaji, N., Xia, J., Mitani-Ueno, N., Yokosho, K., Feng Ma, J.
Preferential delivery of zinc to developing tissues in rice is mediated by P-type heavy metal ATPase OsHMA2.
Plant physiology, 162(2):927-39 (2013)
Doi.org/10.1104/pp.113.216564
Deng, F., Yamaji, N., Xia, J., Ma, J.F.
A member of the heavy metal P-type ATPase OsHMA5 is involved in xylem loading of copper in rice.
Plant physiology, 163(3):1353-62 (2013)
Doi.org/10.1104/pp.113.226225
Kouno, T., Ezaki, B.
Multiple regulation of Arabidopsis AtGST11 gene expression by four transcription factors under abiotic stresses.
Physiologia plantarum, 148(1):97-104 (2013)
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Fukumoto, K., Alamgir, K., Yamashita, Y., Mori, I.C., Matsuura, H., Galis, I.
Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation.
Journal of integrative plant biology, 55(8):775-84 (2013)
Doi.org/10.1111/jipb.12057
Sakuma, S., Pourkheirandish, M., Hensel, G., Kumlehn, J., Stein, N., Tagiri, A., Yamaji, N., Ma, J.F., Sassa, H., Koba, T., Komatsuda, T.
Divergence of expression pattern contributed to neofunctionalization of duplicated HD-Zip I transcription factor in barley.
The New phytologist, 197(3):939-948 (2013)
Doi.org/10.1111/nph.12068
Murata, M., Shibata, F., Hironaka, A., Kashihara, K., Fujimoto, S., Yokota, E., Nagaki, K.
Generation of an artificial ring chromosome in Arabidopsis by Cre/LoxP-mediated recombination.
The Plant journal : for cell and molecular biology, 74(3):363-71 (2013)
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Chen, Z.C., Yokosho, K., Kashino, M., Zhao, F., Yamaji, N., Ma, J.F.
Adaptation to acidic soil is achieved by increased numbers of cis-acting elements regulating ALMT1 expression in Holcus lanatus.
The Plant journal : for cell and molecular biology, 76(1):10-23 (2013)
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Xia, J., Yamaji, N., Ma, J.F.
A plasma membrane-localized small peptide is involved in rice aluminum tolerance.
The Plant journal : for cell and molecular biology, 76(2):345-55 (2013)
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Kondo, H., Chiba, S., Andika, I.B., Maruyama, K., Tamada, T., Suzuki, N.
Orchid fleck virus structural proteins N and P form intranuclear viroplasm-like structures in the absence of viral infection.
Journal of virology, 87(13):7423-34 (2013)
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Chiba, S., Lin, Y., Kondo, H., Kanematsu, S., Suzuki, N.
A novel victorivirus from a phytopathogenic fungus, Rosellinia necatrix, is infectious as particles and targeted by RNA silencing.
Journal of virology, 87(12):6727-38 (2013)
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Chiba, S., Lin, Y., Kondo, H., Kanematsu, S., Suzuki, N.
Effects of defective interfering RNA on symptom induction by, and replication of, a novel partitivirus from a phytopathogenic fungus, Rosellinia necatrix.
Journal of virology, 87(4):2330-41 (2013)
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Mwajita, M.R., Murage, H., Tani, A., Kahangi, E.M.
Evaluation of rhizosphere, rhizoplane and phyllosphere bacteria and fungi isolated from rice in Kenya for plant growth promoters.
SpringerPlus, 2:606 (2013)
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Zhang, L., Sakamoto, W.
Possible function of VIPP1 in thylakoids: protection but not formation?.
Plant signaling & behavior, 8(2):e22860 (2013)
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Kato, Y., Sakamoto, W.
Possible compensatory role among chloroplast proteases under excess-light stress condition.
Plant signaling & behavior, 8(3):e23198 (2013)
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2012
Ezaki, B., Nakakihara, E.
Possible involvement of GDI1 protein, a GDP dissociation inhibitor related to vesicle transport, in an amelioration of zinc toxicity in Saccharomyces cerevisiae.
Yeast (Chichester, England), 29(1):17-24 (2012)
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Nagaki, K., Shibata, F., Kanatani, A., Kashihara, K., Murata, M.
Isolation of centromeric-tandem repetitive DNA sequences by chromatin affinity purification using a HaloTag7-fused centromere-specific histone H3 in tobacco.
Plant cell reports, 31(4):771-9 (2012)
Doi.org/10.1007/s00299-011-1198-4
Sonoda, S., Kohara, Y., Siqingerile, NA., Toyoshima, S., Kishimoto, H., Hinomoto, N.
Phytoseiid mite species composition in Japanese peach orchards estimated using quantitative sequencing.
Experimental & applied acarology, 56(1):9-22 (2012)
Doi.org/10.1007/s10493-011-9485-x
Lin, Y., Chiba, S., Tani, A., Kondo, H., Sasaki, A., Kanematsu, S., Suzuki, N.
A novel quadripartite dsRNA virus isolated from a phytopathogenic filamentous fungus, Rosellinia necatrix.
Virology, 426(1):42-50 (2012)
Doi.org/10.1016/j.virol.2012.01.013
Fujii, M., Yokosho, K., Yamaji, N., Saisho, D., Yamane, M., Takahashi, H., Sato, K., Nakazono, M., Ma, J.F.
Acquisition of aluminium tolerance by modification of a single gene in barley.
Nature communications, 3:713 (2012)
Doi.org/10.1038/ncomms1726
Taketa, S., Yuo, T., Tonooka, T., Tsumuraya, Y., Inagaki, Y., Haruyama, N., Larroque, O., Jobling, S.A.
Functional characterization of barley betaglucanless mutants demonstrates a unique role for CslF6 in (1,3;1,4)-beta-D-glucan biosynthesis.
Journal of experimental botany, 63(1):381-92 (2012)
Doi.org/10.1093/jxb/err285
Yuo, T., Yamashita, Y., Kanamori, H., Matsumoto, T., Lundqvist, U., Sato, K., Ichii, M., Jobling, S.A., Taketa, S.
A SHORT INTERNODES (SHI) family transcription factor gene regulates awn elongation and pistil morphology in barley.
Journal of experimental botany, 63(14):5223-32 (2012)
Doi.org/10.1093/jxb/ers182
Kato, Y., Kouso, T., Sakamoto, W.
Variegated tobacco leaves generated by chloroplast FtsH suppression: implication of FtsH function in the maintenance of thylakoid membranes.
Plant & cell physiology, 53(2):391-404 (2012)
Doi.org/10.1093/pcp/pcr189
Tani, A., Sahin, N., Kimbara, K.
Methylobacterium oxalidis sp. nov., isolated from leaves of Oxalis corniculata.
International journal of systematic and evolutionary microbiology, 62(Pt 7):1647-1652 (2012)
Doi.org/10.1099/ijs.0.033019-0
Tani, A., Sahin, N., Kimbara, K.
Methylobacterium gnaphalii sp. nov., isolated from leaves of Gnaphalium spicatum.
International journal of systematic and evolutionary microbiology, 62(Pt 11):2602-2607 (2012)
Doi.org/10.1099/ijs.0.037713-0
Andika, I.B., Kondo, H., Nishiguchi, M., Tamada, T.
The cysteine-rich proteins of beet necrotic yellow vein virus and tobacco rattle virus contribute to efficient suppression of silencing in roots.
The Journal of general virology, 93(Pt 8):1841-1850 (2012)
Doi.org/10.1099/vir.0.043513-0
Kato, Y., Sun, X., Zhang, L., Sakamoto, W.
Cooperative D1 degradation in the photosystem II repair mediated by chloroplastic proteases in Arabidopsis.
Plant physiology, 159(4):1428-39 (2012)
Doi.org/10.1104/pp.112.199042
Chen, Z.C., Yamaji, N., Motoyama, R., Nagamura, Y., Ma, J.F.
Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice.
Plant physiology, 159(4):1624-33 (2012)
Doi.org/10.1104/pp.112.199778
Sasaki, A., Yamaji, N., Yokosho, K., Ma, J.F.
Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice.
The Plant cell, 24(5):2155-67 (2012)
Doi.org/10.1105/tpc.112.096925
Zhang, L., Kato, Y., Otters, S., Vothknecht, U.C., Sakamoto, W.
Essential role of VIPP1 in chloroplast envelope maintenance in Arabidopsis.
The Plant cell, 24(9):3695-707 (2012)
Doi.org/10.1105/tpc.112.103606
Zheng, L., Yamaji, N., Yokosho, K., Ma, J.F.
YSL16 is a phloem-localized transporter of the copper-nicotianamine complex that is responsible for copper distribution in rice.
The Plant cell, 24(9):3767-82 (2012)
Doi.org/10.1105/tpc.112.103820
Huang, C., Yamaji, N., Ono, K., Ma, J.F.
A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots.
The Plant journal : for cell and molecular biology, 69(4):565-76 (2012)
Doi.org/10.1111/j.1365-313X.2011.04824.x
Huang, C., Yamaji, N., Chen, Z., Ma, J.F.
A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.
The Plant journal : for cell and molecular biology, 69(5):857-67 (2012)
Doi.org/10.1111/j.1365-313X.2011.04837.x
Tang, L.Y., Matsushima, R., Sakamoto, W.
Mutations defective in ribonucleotide reductase activity interfere with pollen plastid DNA degradation mediated by DPD1 exonuclease.
The Plant journal : for cell and molecular biology, 70(4):637-49 (2012)
Doi.org/10.1111/j.1365-313X.2012.04904.x
Hatano, H., Mizuno, N., Matsuda, R., Shitsukawa, N., Park, P., Takumi, S.
Dysfunction of mitotic cell division at shoot apices triggered severe growth abortion in interspecific hybrids between tetraploid wheat and Aegilops tauschii.
The New phytologist, 194(4):1143-1154 (2012)
Doi.org/10.1111/j.1469-8137.2012.04125.x
Horie, T., Karahara, I., Katsuhara, M.
Salinity tolerance mechanisms in glycophytes: An overview with the central focus on rice plants.
Rice (New York, N.Y.), 5(1):11 (2012)
Doi.org/10.1186/1939-8433-5-11
Tani, A., Takai, Y., Suzukawa, I., Akita, M., Murase, H., Kimbara, K.
Practical application of methanol-mediated mutualistic symbiosis between Methylobacterium species and a roof greening moss, Racomitrium japonicum.
PloS one, 7(3):e33800 (2012)
Doi.org/10.1371/journal.pone.0033800
Tani, A., Sahin, N., Matsuyama, Y., Enomoto, T., Nishimura, N., Yokota, A., Kimbara, K.
High-throughput identification and screening of novel Methylobacterium species using whole-cell MALDI-TOF/MS analysis.
PloS one, 7(7):e40784 (2012)
Doi.org/10.1371/journal.pone.0040784
Tsutsui, T., Yamaji, N., Huang, C.F., Motoyama, R., Nagamura, Y., Ma, J.F.
Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice.
PloS one, 7(10):e48197 (2012)
Doi.org/10.1371/journal.pone.0048197
Nagaki, K., Yamamoto, M., Yamaji, N., Mukai, Y., Murata, M.
Chromosome dynamics visualized with an anti-centromeric histone H3 antibody in Allium.
PloS one, 7(12):e51315 (2012)
Doi.org/10.1371/journal.pone.0051315
Shibasaka, M., Sasano, S., Utsugi, S., Katsuhara, M.
Functional characterization of a novel plasma membrane intrinsic protein2 in barley.
Plant signaling & behavior, 7(12):1648-52 (2012)
Doi.org/10.4161/psb.22294
2011
Himi, E., Maekawa, M., Miura, H., Noda, K.
Development of PCR markers for Tamyb10 related to R-1, red grain color gene in wheat.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 122(8):1561-76 (2011)
Doi.org/10.1007/s00122-011-1555-2
Mori, I.C., Murata, Y.
ABA signaling in stomatal guard cells: lessons from Commelina and Vicia.
Journal of plant research, 124(4):477-87 (2011)
Doi.org/10.1007/s10265-011-0435-9
Nagaki, K., Shibata, F., Suzuki, G., Kanatani, A., Ozaki, S., Hironaka, A., Kashihara, K., Murata, M.
Coexistence of NtCENH3 and two retrotransposons in tobacco centromeres.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 19(5):591-605 (2011)
Doi.org/10.1007/s10577-011-9219-2
Tek, A.L., Kashihara, K., Murata, M., Nagaki, K.
Functional centromeres in Astragalus sinicus include a compact centromere-specific histone H3 and a 20-bp tandem repeat.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 19(8):969-78 (2011)
Doi.org/10.1007/s10577-011-9247-y
Yokota, E., Shibata, F., Nagaki, K., Murata, M.
Stability of monocentric and dicentric ring minichromosomes in Arabidopsis.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 19(8):999-1012 (2011)
Doi.org/10.1007/s10577-011-9250-3
Tani, A., Akita, M., Murase, H., Kimbara, K.
Culturable bacteria in hydroponic cultures of moss Racomitrium japonicum and their potential as biofertilizers for moss production.
Journal of bioscience and bioengineering, 112(1):32-9 (2011)
Doi.org/10.1016/j.jbiosc.2011.03.012
Ueno, D., Koyama, E., Yamaji, N., Ma, J.F.
Physiological, genetic, and molecular characterization of a high-Cd-accumulating rice cultivar, Jarjan.
Journal of experimental botany, 62(7):2265-72 (2011)
Doi.org/10.1093/jxb/erq383
Mitani-Ueno, N., Yamaji, N., Zhao, F., Ma, J.F.
The aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron, and arsenic.
Journal of experimental botany, 62(12):4391-8 (2011)
Doi.org/10.1093/jxb/err158
Ueki, S., Citovsky, V.
To gate, or not to gate: regulatory mechanisms for intercellular protein transport and virus movement in plants.
Molecular plant, 4(5):782-93 (2011)
Doi.org/10.1093/mp/ssr060
Zheng, L., Fujii, M., Yamaji, N., Sasaki, A., Yamane, M., Sakurai, I., Sato, K., Ma, J.F.
Isolation and characterization of a barley yellow stripe-like gene, HvYSL5.
Plant & cell physiology, 52(5):765-74 (2011)
Doi.org/10.1093/pcp/pcr009
Sato, K., Close, T.J., Bhat, P., Munoz-Amatriain, M., Muehlbauer, G.J.
Single nucleotide polymorphism mapping and alignment of recombinant chromosome substitution lines in barley.
Plant & cell physiology, 52(5):728-37 (2011)
Doi.org/10.1093/pcp/pcr024
Horie, T., Kaneko, T., Sugimoto, G., Sasano, S., Panda, S.K., Shibasaka, M., Katsuhara, M.
Mechanisms of water transport mediated by PIP aquaporins and their regulation via phosphorylation events under salinity stress in barley roots.
Plant & cell physiology, 52(4):663-75 (2011)
Doi.org/10.1093/pcp/pcr027
Saisho, D., Ishii, M., Hori, K., Sato, K.
Natural variation of barley vernalization requirements: implication of quantitative variation of winter growth habit as an adaptive trait in East Asia.
Plant & cell physiology, 52(5):775-84 (2011)
Doi.org/10.1093/pcp/pcr046
Sahin, N., Tani, A., Kotan, R., Sedlacek, I., Kimbara, K., Tamer, A.U.
Pandoraea oxalativorans sp. nov., Pandoraea faecigallinarum sp. nov. and Pandoraea vervacti sp. nov., isolated from oxalate-enriched culture.
International journal of systematic and evolutionary microbiology, 61(Pt 9):2247-2253 (2011)
Doi.org/10.1099/ijs.0.026138-0
Tsutsui, T., Yamaji, N., Feng Ma, J.
Identification of a cis-acting element of ART1, a C2H2-type zinc-finger transcription factor for aluminum tolerance in rice.
Plant physiology, 156(2):925-31 (2011)
Doi.org/10.1104/pp.111.175802
Sasaki, A., Yamaji, N., Xia, J., Ma, J.F.
OsYSL6 is involved in the detoxification of excess manganese in rice.
Plant physiology, 157(4):1832-40 (2011)
Doi.org/10.1104/pp.111.186031
Matsushima, R., Tang, L.Y., Zhang, L., Yamada, H., Twell, D., Sakamoto, W.
A conserved, Mg(2)+-dependent exonuclease degrades organelle DNA during Arabidopsis pollen development.
The Plant cell, 23(4):1608-24 (2011)
Doi.org/10.1105/tpc.111.084012
Mitani, N., Yamaji, N., Ago, Y., Iwasaki, K., Ma, J.F.
Isolation and functional characterization of an influx silicon transporter in two pumpkin cultivars contrasting in silicon accumulation.
The Plant journal : for cell and molecular biology, 66(2):231-40 (2011)
Doi.org/10.1111/j.1365-313X.2011.04483.x
Ueno, D., Milner, M.J., Yamaji, N., Yokosho, K., Koyama, E., Clemencia Zambrano, M., Kaskie, M., Ebbs, S., Kochian, L.V., Ma, J.F.
Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Thlaspi caerulescens.
The Plant journal : for cell and molecular biology, 66(5):852-62 (2011)
Doi.org/10.1111/j.1365-313X.2011.04548.x
Yokosho, K., Yamaji, N., Ma, J.F.
An Al-inducible MATE gene is involved in external detoxification of Al in rice.
The Plant journal : for cell and molecular biology, 68(6):1061-9 (2011)
Doi.org/10.1111/j.1365-313X.2011.04757.x
Himi, E., Maekawa, M., Noda, K.
Differential expression of three flavanone 3-hydroxylase genes in grains and coleoptiles of wheat.
International journal of plant genomics, 2011:369460 (2011)
Doi.org/10.1155/2011/369460
Sato, K., Motoi, Y., Yamaji, N., Yoshida, H.
454 sequencing of pooled BAC clones on chromosome 3H of barley.
BMC genomics, 12:246 (2011)
Doi.org/10.1186/1471-2164-12-246
Tani, A., Tanaka, A., Minami, T., Kimbara, K., Kawai, F.
Characterization of a cryptic plasmid, pSM103mini, from polyethylene-glycol degrading Sphingopyxis macrogoltabida strain 103.
Bioscience, biotechnology, and biochemistry, 75(2):295-8 (2011)
Doi.org/10.1271/bbb.100650
Chiba, S., Kondo, H., Tani, A., Saisho, D., Sakamoto, W., Kanematsu, S., Suzuki, N.
Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.
PLoS pathogens, 7(7):e1002146 (2011)
Doi.org/10.1371/journal.ppat.1002146
Ma, J.F., Yamaji, N., Mitani-Ueno, N.
Transport of silicon from roots to panicles in plants.
Proceedings of the Japan Academy. Series B, Physical and biological sciences, 87(7):377-85 (2011)
Doi.org/10.2183/pjab.87.377
Xia, J., Yamaji, N., Ma, J.F.
Further characterization of an aluminum influx transporter in rice.
Plant signaling & behavior, 6(1):160-3 (2011)
Doi.org/10.4161/psb.6.1.14319
Mitani-Ueno, N., Yamaji, N., Ma, J.F.
Silicon efflux transporters isolated from two pumpkin cultivars contrasting in Si uptake.
Plant signaling & behavior, 6(7):991-4 (2011)
Doi.org/10.4161/psb.6.7.15462
Tang, L.Y., Sakamoto, W.
Tissue-specific organelle DNA degradation mediated by DPD1 exonuclease.
Plant signaling & behavior, 6(9):1391-3 (2011)
Doi.org/10.4161/psb.6.9.16595
2010
Zhang, X., Tani, A., Kawai, F., Kimbara, K.
Rapid and multiple in situ identification and analyses of physiological status of specific bacteria based on fluorescent in situ hybridization.
Journal of bioscience and bioengineering, 110(6):716-9 (2010)
Doi.org/10.1016/j.jbiosc.2010.07.004
Ueno, D., Yamaji, N., Kono, I., Huang, C.F., Ando, T., Yano, M., Ma, J.F.
Gene limiting cadmium accumulation in rice.
Proceedings of the National Academy of Sciences of the United States of America, 107(38):16500-5 (2010)
Doi.org/10.1073/pnas.1005396107
Taketa, S., Matsuki, K., Amano, S., Saisho, D., Himi, E., Shitsukawa, N., Yuo, T., Noda, K., Takeda, K.
Duplicate polyphenol oxidase genes on barley chromosome 2H and their functional differentiation in the phenol reaction of spikes and grains.
Journal of experimental botany, 61(14):3983-93 (2010)
Doi.org/10.1093/jxb/erq211
Matsushima, R., Maekawa, M., Fujita, N., Sakamoto, W.
A rapid, direct observation method to isolate mutants with defects in starch grain morphology in rice.
Plant & cell physiology, 51(5):728-41 (2010)
Doi.org/10.1093/pcp/pcq040
Huang, C., Yamaji, N., Ma, J.F.
Knockout of a bacterial-type ATP-binding cassette transporter gene, AtSTAR1, results in increased aluminum sensitivity in Arabidopsis.
Plant physiology, 153(4):1669-77 (2010)
Doi.org/10.1104/pp.110.155028
Furuichi, T., Sasaki, T., Tsuchiya, Y., Ryan, P.R., Delhaize, E., Yamamoto, Y.
An extracellular hydrophilic carboxy-terminal domain regulates the activity of TaALMT1, the aluminum-activated malate transport protein of wheat.
The Plant journal : for cell and molecular biology, 64(1):47-55 (2010)
Doi.org/10.1111/j.1365-313X.2010.04309.x
Shagimardanova, E., Gusev, O., Bingham, G.E., Levinskikh, M.A., Sychev, V.N., Tiansu, Z., Kihara, M., Ito, K., Sugimoto, M.
Oxidative stress and antioxidant capacity in barley grown under space environment.
Bioscience, biotechnology, and biochemistry, 74(7):1479-82 (2010)
Doi.org/10.1271/bbb.100139
Chiba, S., Kondo, H., Kanematsu, S., Suzuki, N.
[Mycoviruses and virocontrol].
Uirusu, 60(2):163-76 (2010)
Doi.org/10.2222/jsv.60.163
Arias-Barreiro, C.R., Okazaki, K., Koutsaftis, A., Inayat-Hussain, S.H., Tani, A., Katsuhara, M., Kimbara, K., Mori, I.C.
A bacterial biosensor for oxidative stress using the constitutively expressed redox-sensitive protein roGFP2.
Sensors (Basel, Switzerland), 10(7):6290-6306 (2010)
Doi.org/10.3390/s100706290
Institute of Plant Science and Resources, Okayama University, 2024